Results 1 - 20 of 154 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28816 | 3' | -58 | NC_006146.1 | + | 48160 | 0.66 | 0.885349 |
Target: 5'- aCCCCucguagggGGcCUCCAGAUCCgUGUugaccgucgccgACUuGGCa -3' miRNA: 3'- -GGGG--------CC-GAGGUCUAGG-ACA------------UGA-CCGg -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 147933 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 144855 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 45684 | 0.66 | 0.864289 |
Target: 5'- cCCCUGGauugCUGGAUCCUGcACgaccGCCa -3' miRNA: 3'- -GGGGCCga--GGUCUAGGACaUGac--CGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 141777 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 33167 | 0.66 | 0.864289 |
Target: 5'- cCCCCaggaGCUCCAGAaCCggGUA--GGCCc -3' miRNA: 3'- -GGGGc---CGAGGUCUaGGa-CAUgaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 10822 | 0.66 | 0.864289 |
Target: 5'- -aCCGGCUacacgggccaCAGGUgCCUG-ACUGuGCCg -3' miRNA: 3'- ggGGCCGAg---------GUCUA-GGACaUGAC-CGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 121389 | 0.66 | 0.86282 |
Target: 5'- cCCCCGGaucacccgccgaUCCAGAUgccacgCCgcccCUGGCCg -3' miRNA: 3'- -GGGGCCg-----------AGGUCUA------GGacauGACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 106892 | 0.66 | 0.856868 |
Target: 5'- aCCCUGGCauagUCgGGAUCCUcugggACUGgaaGCCa -3' miRNA: 3'- -GGGGCCG----AGgUCUAGGAca---UGAC---CGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 151011 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 154089 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 157167 | 0.66 | 0.864289 |
Target: 5'- uCCCgGGCUgCCGGGgucCCUccgGCcGGCCu -3' miRNA: 3'- -GGGgCCGA-GGUCUa--GGAca-UGaCCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 103988 | 0.66 | 0.878534 |
Target: 5'- aUCCCaGGCUCCcGGUCUgcaacCUGGUCc -3' miRNA: 3'- -GGGG-CCGAGGuCUAGGacau-GACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 85302 | 0.66 | 0.878534 |
Target: 5'- gCCCCGGUgCCAGcuUCCgagGCgGGCg -3' miRNA: 3'- -GGGGCCGaGGUCu-AGGacaUGaCCGg -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 6751 | 0.66 | 0.878534 |
Target: 5'- aUCCGGCagauccaaUCCAGAUCagcuacuaugaCUGaGgUGGCCa -3' miRNA: 3'- gGGGCCG--------AGGUCUAG-----------GACaUgACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 160038 | 0.66 | 0.878534 |
Target: 5'- uCCCCaugcaaGGCUUgAGAgccguauggCCUGcugGCUGGCUu -3' miRNA: 3'- -GGGG------CCGAGgUCUa--------GGACa--UGACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 22605 | 0.66 | 0.878534 |
Target: 5'- uCUCCGcGCUCCugcuGGAgcUCCUGUuCUGGgUg -3' miRNA: 3'- -GGGGC-CGAGG----UCU--AGGACAuGACCgG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 131846 | 0.66 | 0.878534 |
Target: 5'- -gCCGGCgaccauucaCAGGgccCCUGccUGCUGGCCc -3' miRNA: 3'- ggGGCCGag-------GUCUa--GGAC--AUGACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 22400 | 0.66 | 0.871513 |
Target: 5'- aCCCUGGCcCCgGGGUCCaccgugGUGacccaggUGGCCa -3' miRNA: 3'- -GGGGCCGaGG-UCUAGGa-----CAUg------ACCGG- -5' |
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28816 | 3' | -58 | NC_006146.1 | + | 102371 | 0.66 | 0.871513 |
Target: 5'- aCUCaaaGGuCUCCGGGUCCUcGgggaGCUGGUg -3' miRNA: 3'- -GGGg--CC-GAGGUCUAGGA-Ca---UGACCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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