miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28816 3' -58 NC_006146.1 + 852 0.68 0.745433
Target:  5'- gCCCCGGgccCUCCccGAcaUCCaGggACUGGCCg -3'
miRNA:   3'- -GGGGCC---GAGGu-CU--AGGaCa-UGACCGG- -5'
28816 3' -58 NC_006146.1 + 1784 0.68 0.745433
Target:  5'- gCCCCGGgccCUCCccGAcaUCCaGggACUGGCCg -3'
miRNA:   3'- -GGGGCC---GAGGu-CU--AGGaCa-UGACCGG- -5'
28816 3' -58 NC_006146.1 + 2716 0.68 0.745433
Target:  5'- gCCCCGGgccCUCCccGAcaUCCaGggACUGGCCg -3'
miRNA:   3'- -GGGGCC---GAGGu-CU--AGGaCa-UGACCGG- -5'
28816 3' -58 NC_006146.1 + 3648 0.68 0.745433
Target:  5'- gCCCCGGgccCUCCccGAcaUCCaGggACUGGCCg -3'
miRNA:   3'- -GGGGCC---GAGGu-CU--AGGaCa-UGACCGG- -5'
28816 3' -58 NC_006146.1 + 6751 0.66 0.878534
Target:  5'- aUCCGGCagauccaaUCCAGAUCagcuacuaugaCUGaGgUGGCCa -3'
miRNA:   3'- gGGGCCG--------AGGUCUAG-----------GACaUgACCGG- -5'
28816 3' -58 NC_006146.1 + 10822 0.66 0.864289
Target:  5'- -aCCGGCUacacgggccaCAGGUgCCUG-ACUGuGCCg -3'
miRNA:   3'- ggGGCCGAg---------GUCUA-GGACaUGAC-CGG- -5'
28816 3' -58 NC_006146.1 + 11141 0.66 0.871513
Target:  5'- uCCCCGGC-CCAGGUaaaaacACaggGGCCg -3'
miRNA:   3'- -GGGGCCGaGGUCUAggaca-UGa--CCGG- -5'
28816 3' -58 NC_006146.1 + 13191 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 15434 0.74 0.438027
Target:  5'- gCCCGGCUgCAG-UCCUGc-CUGGCg -3'
miRNA:   3'- gGGGCCGAgGUCuAGGACauGACCGg -5'
28816 3' -58 NC_006146.1 + 16269 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 19347 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 20670 0.68 0.764056
Target:  5'- uUCCUGGCcagUCUgcuGAccUCCUG-GCUGGCCa -3'
miRNA:   3'- -GGGGCCG---AGGu--CU--AGGACaUGACCGG- -5'
28816 3' -58 NC_006146.1 + 21074 0.7 0.646058
Target:  5'- gCCCUGGCcgcccacaccacCCGGAgCCUGuUugUGGCCc -3'
miRNA:   3'- -GGGGCCGa-----------GGUCUaGGAC-AugACCGG- -5'
28816 3' -58 NC_006146.1 + 22400 0.66 0.871513
Target:  5'- aCCCUGGCcCCgGGGUCCaccgugGUGacccaggUGGCCa -3'
miRNA:   3'- -GGGGCCGaGG-UCUAGGa-----CAUg------ACCGG- -5'
28816 3' -58 NC_006146.1 + 22425 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 22605 0.66 0.878534
Target:  5'- uCUCCGcGCUCCugcuGGAgcUCCUGUuCUGGgUg -3'
miRNA:   3'- -GGGGC-CGAGG----UCU--AGGACAuGACCgG- -5'
28816 3' -58 NC_006146.1 + 25150 0.69 0.716818
Target:  5'- aCCCCuaccucuacCUCCAGAUCCUGccc-GGCCa -3'
miRNA:   3'- -GGGGcc-------GAGGUCUAGGACaugaCCGG- -5'
28816 3' -58 NC_006146.1 + 25503 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5'
28816 3' -58 NC_006146.1 + 25634 0.69 0.735977
Target:  5'- cCCCCucaGCUCCaAGAUCacgGcGCUGGUCg -3'
miRNA:   3'- -GGGGc--CGAGG-UCUAGga-CaUGACCGG- -5'
28816 3' -58 NC_006146.1 + 28581 0.67 0.841456
Target:  5'- gCCCGGCcucgcUCCGGGcgccUCCUcggGUucagccGCUGGCUg -3'
miRNA:   3'- gGGGCCG-----AGGUCU----AGGA---CA------UGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.