miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28816 5' -56.8 NC_006146.1 + 22396 0.66 0.901266
Target:  5'- --cUCCacc-CUGGCCCCGGggUCCAc -3'
miRNA:   3'- ucuAGGacauGACCGGGGCCa-AGGUc -5'
28816 5' -56.8 NC_006146.1 + 95351 0.66 0.901266
Target:  5'- cGG-CCacgGUugUGGCCCCcGUUaCCAGg -3'
miRNA:   3'- uCUaGGa--CAugACCGGGGcCAA-GGUC- -5'
28816 5' -56.8 NC_006146.1 + 44722 0.66 0.894204
Target:  5'- cAGGUgCCUGcccACUGGCCCCccuugauGGcUCCAa -3'
miRNA:   3'- -UCUA-GGACa--UGACCGGGG-------CCaAGGUc -5'
28816 5' -56.8 NC_006146.1 + 137586 0.66 0.888225
Target:  5'- cGGUCCUGgaGCUcGGgCCgGGggCCGGg -3'
miRNA:   3'- uCUAGGACa-UGA-CCgGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95987 0.66 0.874299
Target:  5'- nGAUCCUGUACUgccuggGGCCuuGGgaUCu- -3'
miRNA:   3'- uCUAGGACAUGA------CCGGggCCaaGGuc -5'
28816 5' -56.8 NC_006146.1 + 6364 0.66 0.874299
Target:  5'- aAGGUCCUucg-UGGCCCUGGggUCCGu -3'
miRNA:   3'- -UCUAGGAcaugACCGGGGCCa-AGGUc -5'
28816 5' -56.8 NC_006146.1 + 143058 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 146136 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 149214 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 13543 0.66 0.874299
Target:  5'- aGGAaCCUGcUGCaGGCgCCGGgcgCCGGg -3'
miRNA:   3'- -UCUaGGAC-AUGaCCGgGGCCaa-GGUC- -5'
28816 5' -56.8 NC_006146.1 + 158449 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 155370 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 152292 0.66 0.874299
Target:  5'- gAGggCCUG-AaaGGCCCCGGcgCCuGg -3'
miRNA:   3'- -UCuaGGACaUgaCCGGGGCCaaGGuC- -5'
28816 5' -56.8 NC_006146.1 + 136711 0.67 0.859526
Target:  5'- gAGGUcCCUGc-CUGGCCCaGGgUCCGGc -3'
miRNA:   3'- -UCUA-GGACauGACCGGGgCCaAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 128331 0.67 0.851835
Target:  5'- uGGUCCU--GCUGGCCCUGGagaugaagCCGa -3'
miRNA:   3'- uCUAGGAcaUGACCGGGGCCaa------GGUc -5'
28816 5' -56.8 NC_006146.1 + 85510 0.67 0.843948
Target:  5'- gGGAUCCUccACgccGGUCCCGGcUUCUGGc -3'
miRNA:   3'- -UCUAGGAcaUGa--CCGGGGCC-AAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95915 0.68 0.819187
Target:  5'- nGAcUCUGUACUGGCCCCGcUUCn-- -3'
miRNA:   3'- uCUaGGACAUGACCGGGGCcAAGguc -5'
28816 5' -56.8 NC_006146.1 + 157813 0.68 0.81059
Target:  5'- cAGGUCCgaGUacuccuccgcGCUGGCCCCGGaggggaCGGg -3'
miRNA:   3'- -UCUAGGa-CA----------UGACCGGGGCCaag---GUC- -5'
28816 5' -56.8 NC_006146.1 + 115513 0.68 0.810589
Target:  5'- ---gCCgUGaUGCUGGCCUCGGUgccCCGGg -3'
miRNA:   3'- ucuaGG-AC-AUGACCGGGGCCAa--GGUC- -5'
28816 5' -56.8 NC_006146.1 + 42926 0.68 0.792928
Target:  5'- cGAUCCgGUACacuaGGUCCCGGUcCCu- -3'
miRNA:   3'- uCUAGGaCAUGa---CCGGGGCCAaGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.