miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28816 5' -56.8 NC_006146.1 + 142077 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 145155 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 157467 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 154389 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 151311 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 148233 0.69 0.774698
Target:  5'- gGGGUCCcuccgGCUGGCCUgGGacCCGGg -3'
miRNA:   3'- -UCUAGGaca--UGACCGGGgCCaaGGUC- -5'
28816 5' -56.8 NC_006146.1 + 101968 0.71 0.64721
Target:  5'- gAGAucUCCUGgGCccaGGCCCCGGUcucgUCCAu -3'
miRNA:   3'- -UCU--AGGACaUGa--CCGGGGCCA----AGGUc -5'
28816 5' -56.8 NC_006146.1 + 53648 0.72 0.576513
Target:  5'- gGGAaCCUGccgacccccCUGGCCCCGGccgcuUUCCAGg -3'
miRNA:   3'- -UCUaGGACau-------GACCGGGGCC-----AAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 33318 0.74 0.460689
Target:  5'- cGGUCCUGg---GGCUCCGGggUCCGGg -3'
miRNA:   3'- uCUAGGACaugaCCGGGGCCa-AGGUC- -5'
28816 5' -56.8 NC_006146.1 + 47738 0.74 0.451568
Target:  5'- gAGGUCUUGgagggGCUGGCCCUGGggaCGGa -3'
miRNA:   3'- -UCUAGGACa----UGACCGGGGCCaagGUC- -5'
28816 5' -56.8 NC_006146.1 + 95796 0.79 0.248446
Target:  5'- nGAUCCUGUACU-GCCCCGGUUCn-- -3'
miRNA:   3'- uCUAGGACAUGAcCGGGGCCAAGguc -5'
28816 5' -56.8 NC_006146.1 + 95963 0.84 0.130287
Target:  5'- nGAcUCUGUACUGGCCCaGGUUCCAGa -3'
miRNA:   3'- uCUaGGACAUGACCGGGgCCAAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95843 0.84 0.120608
Target:  5'- nGAUCCUGUACUGGCCCCGGcUCn-- -3'
miRNA:   3'- uCUAGGACAUGACCGGGGCCaAGguc -5'
28816 5' -56.8 NC_006146.1 + 95771 0.89 0.05928
Target:  5'- uGGAcUCUGUACUGGCCCCGGcUCCAGa -3'
miRNA:   3'- -UCUaGGACAUGACCGGGGCCaAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95938 0.9 0.050485
Target:  5'- uGGAcUCUGUACUGGCCCCGGUUCUGGa -3'
miRNA:   3'- -UCUaGGACAUGACCGGGGCCAAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95818 1.01 0.008614
Target:  5'- cAGAUCCUGUACUGGCCCCGGcUCCAGa -3'
miRNA:   3'- -UCUAGGACAUGACCGGGGCCaAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95891 1.05 0.004582
Target:  5'- nGAUCCUGUACUGGCCCCGGUUCCGGa -3'
miRNA:   3'- uCUAGGACAUGACCGGGGCCAAGGUC- -5'
28816 5' -56.8 NC_006146.1 + 95866 1.09 0.002718
Target:  5'- cAGAUCCUGUACUGGCCCCGGUUCCAGa -3'
miRNA:   3'- -UCUAGGACAUGACCGGGGCCAAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.