miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28817 3' -57.1 NC_006146.1 + 97823 0.66 0.876547
Target:  5'- --cUGuCCACCCu-GGUGAaguaccacgaccugGAGGAGGGg -3'
miRNA:   3'- uaaAC-GGUGGGucCCACU--------------CUCCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 14812 0.66 0.871466
Target:  5'- ---gGCCGgCCGGGcc-GGAGGAGGGc -3'
miRNA:   3'- uaaaCGGUgGGUCCcacUCUCCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 167494 0.66 0.871466
Target:  5'- --gUGCCuggCGGGG-GAGAGGGGGc -3'
miRNA:   3'- uaaACGGuggGUCCCaCUCUCCUCCu -5'
28817 3' -57.1 NC_006146.1 + 169358 0.66 0.871466
Target:  5'- --gUGCCuggCGGGG-GAGAGGGGGc -3'
miRNA:   3'- uaaACGGuggGUCCCaCUCUCCUCCu -5'
28817 3' -57.1 NC_006146.1 + 35205 0.66 0.871466
Target:  5'- ---cGCguCCCAGGGaGGGAaGAGGGc -3'
miRNA:   3'- uaaaCGguGGGUCCCaCUCUcCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 168426 0.66 0.871466
Target:  5'- --gUGCCuggCGGGG-GAGAGGGGGc -3'
miRNA:   3'- uaaACGGuggGUCCCaCUCUCCUCCu -5'
28817 3' -57.1 NC_006146.1 + 170289 0.66 0.871466
Target:  5'- --gUGCCuggCGGGG-GAGAGGGGGc -3'
miRNA:   3'- uaaACGGuggGUCCCaCUCUCCUCCu -5'
28817 3' -57.1 NC_006146.1 + 157283 0.66 0.864026
Target:  5'- ---cGUCAgcCCCAGGGUGGG-GGuGGc -3'
miRNA:   3'- uaaaCGGU--GGGUCCCACUCuCCuCCu -5'
28817 3' -57.1 NC_006146.1 + 41055 0.66 0.864026
Target:  5'- ---gGCgGCCCuGGGggccucgGGGuGGAGGGa -3'
miRNA:   3'- uaaaCGgUGGGuCCCa------CUCuCCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 34218 0.66 0.863271
Target:  5'- ---cGCCGCCCgcuucauGGGGgGGGAGGccgccgcaAGGAc -3'
miRNA:   3'- uaaaCGGUGGG-------UCCCaCUCUCC--------UCCU- -5'
28817 3' -57.1 NC_006146.1 + 138048 0.66 0.863271
Target:  5'- ---cGCCGCCCgcuucauGGGGgGGGAGGccgccgcaAGGAc -3'
miRNA:   3'- uaaaCGGUGGG-------UCCCaCUCUCC--------UCCU- -5'
28817 3' -57.1 NC_006146.1 + 137381 0.66 0.856378
Target:  5'- ---gGCacaACCUAGGGaGGGAGGccGGGAg -3'
miRNA:   3'- uaaaCGg--UGGGUCCCaCUCUCC--UCCU- -5'
28817 3' -57.1 NC_006146.1 + 44680 0.66 0.848526
Target:  5'- ---aGUgACUCcGGGcccgGAGAGGAGGAc -3'
miRNA:   3'- uaaaCGgUGGGuCCCa---CUCUCCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 43649 0.66 0.840479
Target:  5'- ---gGCCGCCUGGGGaGAGGGGcccGGc -3'
miRNA:   3'- uaaaCGGUGGGUCCCaCUCUCCu--CCu -5'
28817 3' -57.1 NC_006146.1 + 130949 0.67 0.835559
Target:  5'- ---aGCagggACCCGGGGUgcuggcggaacuccaGAGAuGGAGGAg -3'
miRNA:   3'- uaaaCGg---UGGGUCCCA---------------CUCU-CCUCCU- -5'
28817 3' -57.1 NC_006146.1 + 149938 0.67 0.832242
Target:  5'- --cUGCC-CUCGGGGuUGAGGGGcgcccaggcguuGGGAg -3'
miRNA:   3'- uaaACGGuGGGUCCC-ACUCUCC------------UCCU- -5'
28817 3' -57.1 NC_006146.1 + 115653 0.67 0.832242
Target:  5'- ---cGCCACCCGGGcGgGGGucauGGuGGAg -3'
miRNA:   3'- uaaaCGGUGGGUCC-CaCUCu---CCuCCU- -5'
28817 3' -57.1 NC_006146.1 + 169988 0.67 0.823824
Target:  5'- ---cGCgCGCCCGGGGUcccGGGGGGcGGc -3'
miRNA:   3'- uaaaCG-GUGGGUCCCA---CUCUCCuCCu -5'
28817 3' -57.1 NC_006146.1 + 169056 0.67 0.823824
Target:  5'- ---cGCgCGCCCGGGGUcccGGGGGGcGGc -3'
miRNA:   3'- uaaaCG-GUGGGUCCCA---CUCUCCuCCu -5'
28817 3' -57.1 NC_006146.1 + 168124 0.67 0.823824
Target:  5'- ---cGCgCGCCCGGGGUcccGGGGGGcGGc -3'
miRNA:   3'- uaaaCG-GUGGGUCCCA---CUCUCCuCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.