miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28817 5' -61.7 NC_006146.1 + 122519 0.66 0.691585
Target:  5'- aGGCCGCGGa----GCCcGGGUGGUUc -3'
miRNA:   3'- -CCGGCGUCgguagUGGaCCCACCGGu -5'
28817 5' -61.7 NC_006146.1 + 146830 0.66 0.691585
Target:  5'- aGGCCGC-GCCAgcguagaGCCcGGGccUGGCUc -3'
miRNA:   3'- -CCGGCGuCGGUag-----UGGaCCC--ACCGGu -5'
28817 5' -61.7 NC_006146.1 + 115951 0.66 0.691585
Target:  5'- cGGCgGCGGCgGUCGCCccgcGGGcagacgucgaGGCCu -3'
miRNA:   3'- -CCGgCGUCGgUAGUGGa---CCCa---------CCGGu -5'
28817 5' -61.7 NC_006146.1 + 70124 0.66 0.685748
Target:  5'- aGGCUGUGccacugaucuuugccGCCuUCGCCUGGcuccUGGCCGg -3'
miRNA:   3'- -CCGGCGU---------------CGGuAGUGGACCc---ACCGGU- -5'
28817 5' -61.7 NC_006146.1 + 56321 0.66 0.681849
Target:  5'- aGGCCGUAGCUG-CGCCgcgagaaGGaGGCCGc -3'
miRNA:   3'- -CCGGCGUCGGUaGUGGac-----CCaCCGGU- -5'
28817 5' -61.7 NC_006146.1 + 59761 0.66 0.681849
Target:  5'- aGGCCaGCcGCCcggcCACCUGGG-GGUUg -3'
miRNA:   3'- -CCGG-CGuCGGua--GUGGACCCaCCGGu -5'
28817 5' -61.7 NC_006146.1 + 71431 0.66 0.681849
Target:  5'- aGGgCGCGGCCGgcauuuuggCACCUGGc--GCCGa -3'
miRNA:   3'- -CCgGCGUCGGUa--------GUGGACCcacCGGU- -5'
28817 5' -61.7 NC_006146.1 + 102397 0.66 0.681849
Target:  5'- aGCUGguGgUAUCugucCCUGGGgcGGCCAa -3'
miRNA:   3'- cCGGCguCgGUAGu---GGACCCa-CCGGU- -5'
28817 5' -61.7 NC_006146.1 + 68440 0.66 0.672074
Target:  5'- cGCCGCGGCCGgcuCCUGGaaaGCCu -3'
miRNA:   3'- cCGGCGUCGGUaguGGACCcacCGGu -5'
28817 5' -61.7 NC_006146.1 + 55042 0.66 0.672074
Target:  5'- gGGUCGgGGCCGggGCCUGccacaGGcGGCCGu -3'
miRNA:   3'- -CCGGCgUCGGUagUGGAC-----CCaCCGGU- -5'
28817 5' -61.7 NC_006146.1 + 45520 0.66 0.672074
Target:  5'- cGGCCaCGGUgGggGCCUGGGccuccuugggcuUGGCCGc -3'
miRNA:   3'- -CCGGcGUCGgUagUGGACCC------------ACCGGU- -5'
28817 5' -61.7 NC_006146.1 + 159976 0.66 0.672074
Target:  5'- uGGCgCGCaggAGCCcgCAgUUGGGgucUGGCCu -3'
miRNA:   3'- -CCG-GCG---UCGGuaGUgGACCC---ACCGGu -5'
28817 5' -61.7 NC_006146.1 + 53001 0.66 0.666195
Target:  5'- cGGCCGUGGCCG-CgggggucgaugaccaGCCUcGGGUGcCCAu -3'
miRNA:   3'- -CCGGCGUCGGUaG---------------UGGA-CCCACcGGU- -5'
28817 5' -61.7 NC_006146.1 + 43642 0.66 0.66227
Target:  5'- gGGgCGUGGCC---GCCUGGGgagaggGGCCc -3'
miRNA:   3'- -CCgGCGUCGGuagUGGACCCa-----CCGGu -5'
28817 5' -61.7 NC_006146.1 + 47010 0.66 0.661288
Target:  5'- cGGCaGCGGCCcgGUCGgacucgcgggcgcCCUGGGUgcgagaaggGGCCGg -3'
miRNA:   3'- -CCGgCGUCGG--UAGU-------------GGACCCA---------CCGGU- -5'
28817 5' -61.7 NC_006146.1 + 161751 0.66 0.652443
Target:  5'- gGGUgGCGGCUgagGUCcgagggggcGCCUGGGcgggGGCCu -3'
miRNA:   3'- -CCGgCGUCGG---UAG---------UGGACCCa---CCGGu -5'
28817 5' -61.7 NC_006146.1 + 56161 0.66 0.652443
Target:  5'- -cCCGCGGCCGUC-CUUGaGGaUGcGCCGa -3'
miRNA:   3'- ccGGCGUCGGUAGuGGAC-CC-AC-CGGU- -5'
28817 5' -61.7 NC_006146.1 + 83647 0.66 0.652443
Target:  5'- gGGCUcuGCgGGCCAgaccucCACCuuUGGGuUGGCCAc -3'
miRNA:   3'- -CCGG--CG-UCGGUa-----GUGG--ACCC-ACCGGU- -5'
28817 5' -61.7 NC_006146.1 + 85595 0.66 0.652443
Target:  5'- aGCCGCccgccucggaAGCUggCACCgGGGcaaagGGCCAg -3'
miRNA:   3'- cCGGCG----------UCGGuaGUGGaCCCa----CCGGU- -5'
28817 5' -61.7 NC_006146.1 + 39070 0.66 0.652443
Target:  5'- uGGUCGcCGGCC-UCcggUCUGGGgaaGGCCAg -3'
miRNA:   3'- -CCGGC-GUCGGuAGu--GGACCCa--CCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.