miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28818 3' -55.2 NC_006146.1 + 118975 0.66 0.945996
Target:  5'- cCAUGUcucaCGGuaaGGAGGAGCUGgGggGAGg -3'
miRNA:   3'- -GUACG----GCCug-UCUCCUCGAUgCa-CUC- -5'
28818 3' -55.2 NC_006146.1 + 167255 0.66 0.941488
Target:  5'- --cGCUGGugAGgcAGGAGCUcaGCGaGAGc -3'
miRNA:   3'- guaCGGCCugUC--UCCUCGA--UGCaCUC- -5'
28818 3' -55.2 NC_006146.1 + 141968 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 145046 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 148124 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 151202 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 154280 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 157358 0.66 0.941025
Target:  5'- --gGCCGGGCGGGcggggacGGGGCUGCucGGGu -3'
miRNA:   3'- guaCGGCCUGUCU-------CCUCGAUGcaCUC- -5'
28818 3' -55.2 NC_006146.1 + 165807 0.66 0.936744
Target:  5'- --gGCCGGcUAGGGGGGCgucccuggccGCGUGGa -3'
miRNA:   3'- guaCGGCCuGUCUCCUCGa---------UGCACUc -5'
28818 3' -55.2 NC_006146.1 + 41085 0.66 0.936744
Target:  5'- --gGCCagGGACAGcgagGGGAGCcagGCGUGcAGg -3'
miRNA:   3'- guaCGG--CCUGUC----UCCUCGa--UGCAC-UC- -5'
28818 3' -55.2 NC_006146.1 + 124928 0.66 0.935274
Target:  5'- --cGCgGGGC-GAGGAGCUgccccgggcagagaGCGUcGAGg -3'
miRNA:   3'- guaCGgCCUGuCUCCUCGA--------------UGCA-CUC- -5'
28818 3' -55.2 NC_006146.1 + 153508 0.66 0.931761
Target:  5'- cCGUGCUucuggaggcuguGGAUGGAGuGGGggGCGUGGGg -3'
miRNA:   3'- -GUACGG------------CCUGUCUC-CUCgaUGCACUC- -5'
28818 3' -55.2 NC_006146.1 + 90178 0.66 0.931761
Target:  5'- --gGCCGcGGCAGGGGAGgUA-GUGcAGg -3'
miRNA:   3'- guaCGGC-CUGUCUCCUCgAUgCAC-UC- -5'
28818 3' -55.2 NC_006146.1 + 53338 0.66 0.926539
Target:  5'- --gGCCcGGCGGccgcGGGGCgGCGUGAGg -3'
miRNA:   3'- guaCGGcCUGUCu---CCUCGaUGCACUC- -5'
28818 3' -55.2 NC_006146.1 + 43224 0.67 0.921078
Target:  5'- -cUGCUGGugAGAGGAGCcccccugGAGc -3'
miRNA:   3'- guACGGCCugUCUCCUCGaugca--CUC- -5'
28818 3' -55.2 NC_006146.1 + 77832 0.67 0.921078
Target:  5'- --cGgCGGAgGGGGGGGCggggGgGUGGGa -3'
miRNA:   3'- guaCgGCCUgUCUCCUCGa---UgCACUC- -5'
28818 3' -55.2 NC_006146.1 + 136988 0.67 0.921078
Target:  5'- ---aCCGGAcCGGAGGAGCUccaggACG-GGGg -3'
miRNA:   3'- guacGGCCU-GUCUCCUCGA-----UGCaCUC- -5'
28818 3' -55.2 NC_006146.1 + 137175 0.67 0.921078
Target:  5'- ---aCCGGAcCGGAGGAGCUccagaACG-GGGg -3'
miRNA:   3'- guacGGCCU-GUCUCCUCGA-----UGCaCUC- -5'
28818 3' -55.2 NC_006146.1 + 64442 0.67 0.915377
Target:  5'- -cUGCCaggaGACAGAGGGGCUguuucacguACGUGc- -3'
miRNA:   3'- guACGGc---CUGUCUCCUCGA---------UGCACuc -5'
28818 3' -55.2 NC_006146.1 + 48636 0.67 0.909438
Target:  5'- gGUGCCGGAgGGAGGAa--ACaUGAGa -3'
miRNA:   3'- gUACGGCCUgUCUCCUcgaUGcACUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.