miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28818 5' -55.7 NC_006146.1 + 106634 0.66 0.925716
Target:  5'- uUGCCgCA-GcGCCUGCUG-CGGCCGGc -3'
miRNA:   3'- -ACGG-GUgCaCGGACGACaGUUGGUUc -5'
28818 5' -55.7 NC_006146.1 + 96741 0.66 0.925716
Target:  5'- uUGCCCGCaccgguuugaagGUGCCUGCUGaguaggacacguUCcACCu-- -3'
miRNA:   3'- -ACGGGUG------------CACGGACGAC------------AGuUGGuuc -5'
28818 5' -55.7 NC_006146.1 + 49787 0.66 0.925716
Target:  5'- aUGCUCGCGUGCCggaUGUUGagGuCCGAc -3'
miRNA:   3'- -ACGGGUGCACGG---ACGACagUuGGUUc -5'
28818 5' -55.7 NC_006146.1 + 3398 0.66 0.925716
Target:  5'- gGCCCugaaGCGUGCCUGUgaagUGgCAggguGCCAAu -3'
miRNA:   3'- aCGGG----UGCACGGACG----ACaGU----UGGUUc -5'
28818 5' -55.7 NC_006146.1 + 53036 0.66 0.920189
Target:  5'- gUGCCCAUcucaGCC-GCUGUCA-UCAAGu -3'
miRNA:   3'- -ACGGGUGca--CGGaCGACAGUuGGUUC- -5'
28818 5' -55.7 NC_006146.1 + 53014 0.66 0.920189
Target:  5'- gGCCCugG-GCCUcacgcgGCUGgccgCGGCCGc- -3'
miRNA:   3'- aCGGGugCaCGGA------CGACa---GUUGGUuc -5'
28818 5' -55.7 NC_006146.1 + 40523 0.66 0.920189
Target:  5'- gGCCCACGUGUUUucccgggggaGCUcUCAGCCc-- -3'
miRNA:   3'- aCGGGUGCACGGA----------CGAcAGUUGGuuc -5'
28818 5' -55.7 NC_006146.1 + 142842 0.66 0.920189
Target:  5'- aGCCCaugGCGUGCUUGgCUauugCAGCCAc- -3'
miRNA:   3'- aCGGG---UGCACGGAC-GAca--GUUGGUuc -5'
28818 5' -55.7 NC_006146.1 + 42899 0.66 0.920189
Target:  5'- gGCCgACGcuaggGCCUcugucccgGCUGUCAgcagcggcGCCAAGc -3'
miRNA:   3'- aCGGgUGCa----CGGA--------CGACAGU--------UGGUUC- -5'
28818 5' -55.7 NC_006146.1 + 66352 0.66 0.920189
Target:  5'- aGCCCACGUGCagGgaGUgAugCAGc -3'
miRNA:   3'- aCGGGUGCACGgaCgaCAgUugGUUc -5'
28818 5' -55.7 NC_006146.1 + 112440 0.66 0.914421
Target:  5'- gGCUgAUGUGCUUGCcGUCcuuGCCAu- -3'
miRNA:   3'- aCGGgUGCACGGACGaCAGu--UGGUuc -5'
28818 5' -55.7 NC_006146.1 + 46365 0.66 0.914421
Target:  5'- cUGCUCugcguuuUGUGCCUGCUGUUgcuGugUGAGa -3'
miRNA:   3'- -ACGGGu------GCACGGACGACAG---UugGUUC- -5'
28818 5' -55.7 NC_006146.1 + 99375 0.66 0.914421
Target:  5'- gGCCgCGCGUugagGCCcaggaGCgaGUCGGCCAGGg -3'
miRNA:   3'- aCGG-GUGCA----CGGa----CGa-CAGUUGGUUC- -5'
28818 5' -55.7 NC_006146.1 + 160018 0.66 0.908412
Target:  5'- uUGCCCACc-GCCccGCUGUCuccccAugCAAGg -3'
miRNA:   3'- -ACGGGUGcaCGGa-CGACAG-----UugGUUC- -5'
28818 5' -55.7 NC_006146.1 + 139400 0.66 0.904693
Target:  5'- gGCCCccacggcgccgggggAgGUGCCUGCUGUUuAgUAGGa -3'
miRNA:   3'- aCGGG---------------UgCACGGACGACAGuUgGUUC- -5'
28818 5' -55.7 NC_006146.1 + 160592 0.66 0.902165
Target:  5'- aUGUgUGCGUGCUUGCccccgagGUCGGCCGc- -3'
miRNA:   3'- -ACGgGUGCACGGACGa------CAGUUGGUuc -5'
28818 5' -55.7 NC_006146.1 + 46585 0.66 0.902165
Target:  5'- cGCCagcaGCGUcaugGCCacgaugggGUUGUCGGCCAGGu -3'
miRNA:   3'- aCGGg---UGCA----CGGa-------CGACAGUUGGUUC- -5'
28818 5' -55.7 NC_006146.1 + 61985 0.66 0.902165
Target:  5'- gGCCCACGUcaCCUGCUcgGUCGcuGCUGAc -3'
miRNA:   3'- aCGGGUGCAc-GGACGA--CAGU--UGGUUc -5'
28818 5' -55.7 NC_006146.1 + 77547 0.66 0.902165
Target:  5'- gGgCCACGUGUacguggcGCUGUCcagGGCCAGGc -3'
miRNA:   3'- aCgGGUGCACGga-----CGACAG---UUGGUUC- -5'
28818 5' -55.7 NC_006146.1 + 10834 0.66 0.895683
Target:  5'- gGCCaCAgGUGCCUGaCUGU--GCCGc- -3'
miRNA:   3'- aCGG-GUgCACGGAC-GACAguUGGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.