miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28819 5' -56.6 NC_006146.1 + 109124 0.66 0.861473
Target:  5'- gAGCAGGGUGAUGuuugggcacagaggCCUcgGCCGCUg- -3'
miRNA:   3'- -UUGUCCCACUACua------------GGGa-CGGUGGua -5'
28819 5' -56.6 NC_006146.1 + 35476 0.66 0.860699
Target:  5'- aAACGGGGUG-UGcAUacaCCaGCCACCAg -3'
miRNA:   3'- -UUGUCCCACuAC-UAg--GGaCGGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 98862 0.66 0.836533
Target:  5'- cGGCGGGGUGccUGcgCCgaGUCACCAc -3'
miRNA:   3'- -UUGUCCCACu-ACuaGGgaCGGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 120408 0.67 0.828086
Target:  5'- cGACGGGGUGggGGccaaCCUGgCCAUCAa -3'
miRNA:   3'- -UUGUCCCACuaCUag--GGAC-GGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 128423 0.67 0.819455
Target:  5'- -cCAGGGgagGGUGAUCCggGCCGCa-- -3'
miRNA:   3'- uuGUCCCa--CUACUAGGgaCGGUGgua -5'
28819 5' -56.6 NC_006146.1 + 109405 0.68 0.748778
Target:  5'- cGGCAGGGgccuccucggagcccUGGUGAU-CCUGCCACUc- -3'
miRNA:   3'- -UUGUCCC---------------ACUACUAgGGACGGUGGua -5'
28819 5' -56.6 NC_006146.1 + 72030 0.68 0.730992
Target:  5'- gGAguGGGUGGUGAcucggcgcaggcaCCCcGCCGCCAUu -3'
miRNA:   3'- -UUguCCCACUACUa------------GGGaCGGUGGUA- -5'
28819 5' -56.6 NC_006146.1 + 68739 0.69 0.674086
Target:  5'- cGCGGGGUGGUGGaggCCCagGUgGCCAa -3'
miRNA:   3'- uUGUCCCACUACUa--GGGa-CGgUGGUa -5'
28819 5' -56.6 NC_006146.1 + 152502 0.72 0.536143
Target:  5'- uGugAGGGUGAUGAcuaggaucaccacCCCgGCCACCAg -3'
miRNA:   3'- -UugUCCCACUACUa------------GGGaCGGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 42077 0.74 0.416297
Target:  5'- cGACAGGGUGAccccCUCUGCCGCCGc -3'
miRNA:   3'- -UUGUCCCACUacuaGGGACGGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 18394 0.74 0.398799
Target:  5'- -cCGGGGUGGUGAUCCUaGUCAUCAc -3'
miRNA:   3'- uuGUCCCACUACUAGGGaCGGUGGUa -5'
28819 5' -56.6 NC_006146.1 + 84284 1.04 0.004694
Target:  5'- cAACAGGGUGAUGAUCCCUGCCACCAUa -3'
miRNA:   3'- -UUGUCCCACUACUAGGGACGGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.