miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28820 3' -61.5 NC_006146.1 + 67077 0.66 0.712675
Target:  5'- uUCUCCCAGGuuuGGUGGcGGAGCucuuGGCa- -3'
miRNA:   3'- gAGAGGGUCUc--CCACU-CCUCG----CCGga -5'
28820 3' -61.5 NC_006146.1 + 142307 0.66 0.712675
Target:  5'- uUCUCCaCAGGGcaGGUGuGaAGCGGCUg -3'
miRNA:   3'- gAGAGG-GUCUC--CCACuCcUCGCCGGa -5'
28820 3' -61.5 NC_006146.1 + 113721 0.66 0.702091
Target:  5'- uUCUCcaCCAGggggcccacuGGGGUGAGGAaggcguggaagcgGCGGUCg -3'
miRNA:   3'- gAGAG--GGUC----------UCCCACUCCU-------------CGCCGGa -5'
28820 3' -61.5 NC_006146.1 + 65037 0.66 0.693382
Target:  5'- --gUCCCAGGGcccacuGcGAGGAGCGGCaCUg -3'
miRNA:   3'- gagAGGGUCUCc-----CaCUCCUCGCCG-GA- -5'
28820 3' -61.5 NC_006146.1 + 153416 0.66 0.693382
Target:  5'- -gUUCCCGGGggcGGGUGuggcuggcuuuGGAGgGGCCg -3'
miRNA:   3'- gaGAGGGUCU---CCCACu----------CCUCgCCGGa -5'
28820 3' -61.5 NC_006146.1 + 43165 0.66 0.693382
Target:  5'- uUUUCCgGGAGGcucaGAGGAGCuaccuGGCCUu -3'
miRNA:   3'- gAGAGGgUCUCCca--CUCCUCG-----CCGGA- -5'
28820 3' -61.5 NC_006146.1 + 52701 0.66 0.68366
Target:  5'- -gCUCCgGGcGGGaggucaGGGGGCGGCCg -3'
miRNA:   3'- gaGAGGgUCuCCCac----UCCUCGCCGGa -5'
28820 3' -61.5 NC_006146.1 + 81659 0.66 0.68366
Target:  5'- ---gCUCGGAGGGUGccgGGGAaGCGGCg- -3'
miRNA:   3'- gagaGGGUCUCCCAC---UCCU-CGCCGga -5'
28820 3' -61.5 NC_006146.1 + 4412 0.66 0.673899
Target:  5'- aUCUUCCGGAcGGUccaGGGGcuggugaaaAGCGGCCUc -3'
miRNA:   3'- gAGAGGGUCUcCCA---CUCC---------UCGCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 39374 0.66 0.673899
Target:  5'- --gUCCCGGgAGGGUGAgaaagGGGGUGGUUc -3'
miRNA:   3'- gagAGGGUC-UCCCACU-----CCUCGCCGGa -5'
28820 3' -61.5 NC_006146.1 + 31681 0.66 0.673899
Target:  5'- ---gCCCAGggaccagggaAGGGUGGGGGaccGCGGCUg -3'
miRNA:   3'- gagaGGGUC----------UCCCACUCCU---CGCCGGa -5'
28820 3' -61.5 NC_006146.1 + 106116 0.66 0.673899
Target:  5'- uUCUUCCGguaaacGAGGGuUGAGGGGUgagagcuccaaGGCCa -3'
miRNA:   3'- gAGAGGGU------CUCCC-ACUCCUCG-----------CCGGa -5'
28820 3' -61.5 NC_006146.1 + 84146 0.66 0.664106
Target:  5'- -cCUCCgAaacaacAGGGUGAGGAGacgGGCCg -3'
miRNA:   3'- gaGAGGgUc-----UCCCACUCCUCg--CCGGa -5'
28820 3' -61.5 NC_006146.1 + 39872 0.66 0.65429
Target:  5'- ---gCCCGGGGGaGgaggcUGAGGcugAGCGGCCUg -3'
miRNA:   3'- gagaGGGUCUCC-C-----ACUCC---UCGCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 169068 0.67 0.644457
Target:  5'- --gUCCCGGGGGGcGGcGcGCGGCCUu -3'
miRNA:   3'- gagAGGGUCUCCCaCUcCuCGCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 170187 0.67 0.644457
Target:  5'- -gCUCCC-GAGGGcGGGGccGgGGCCUg -3'
miRNA:   3'- gaGAGGGuCUCCCaCUCCu-CgCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 167204 0.67 0.644457
Target:  5'- --gUCCCGGGGGGcGGcGcGCGGCCUu -3'
miRNA:   3'- gagAGGGUCUCCCaCUcCuCGCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 168324 0.67 0.644457
Target:  5'- -gCUCCC-GAGGGcGGGGccGgGGCCUg -3'
miRNA:   3'- gaGAGGGuCUCCCaCUCCu-CgCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 170000 0.67 0.644457
Target:  5'- --gUCCCGGGGGGcGGcGcGCGGCCUu -3'
miRNA:   3'- gagAGGGUCUCCCaCUcCuCGCCGGA- -5'
28820 3' -61.5 NC_006146.1 + 19710 0.67 0.644457
Target:  5'- cCUCUggUCCAcGGGG-GAGGAGgcCGGCCg -3'
miRNA:   3'- -GAGA--GGGUcUCCCaCUCCUC--GCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.