miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28820 5' -55.7 NC_006146.1 + 63109 0.66 0.929217
Target:  5'- uGAAGGAgacccUGCGCAggUgCC-CCUGGGAc -3'
miRNA:   3'- -CUUUCU-----ACGCGUa-GgGGaGGACCCUc -5'
28820 5' -55.7 NC_006146.1 + 103564 0.66 0.923865
Target:  5'- cGAGGAUGgGC-UCgCCCgggCCUGGGccGGg -3'
miRNA:   3'- cUUUCUACgCGuAG-GGGa--GGACCC--UC- -5'
28820 5' -55.7 NC_006146.1 + 23918 0.66 0.91244
Target:  5'- cGAAGAuUGCGCccagCCCCUCCUGccccaaGGGc -3'
miRNA:   3'- cUUUCU-ACGCGua--GGGGAGGAC------CCUc -5'
28820 5' -55.7 NC_006146.1 + 93592 0.66 0.91244
Target:  5'- -uGGGcAUGCGCGaCCCgccgggCUCCUGGGGc -3'
miRNA:   3'- cuUUC-UACGCGUaGGG------GAGGACCCUc -5'
28820 5' -55.7 NC_006146.1 + 136339 0.66 0.91244
Target:  5'- ---cGggGCGCAgaaccucCCCCUCCUGGu-- -3'
miRNA:   3'- cuuuCuaCGCGUa------GGGGAGGACCcuc -5'
28820 5' -55.7 NC_006146.1 + 144254 0.66 0.91244
Target:  5'- --uGGgcGCGCAuggccugagUCCCuacuuuuaggggCUCCUGGGGGg -3'
miRNA:   3'- cuuUCuaCGCGU---------AGGG------------GAGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 147332 0.66 0.91244
Target:  5'- --uGGgcGCGCAuggccugagUCCCuacuuuuaggggCUCCUGGGGGg -3'
miRNA:   3'- cuuUCuaCGCGU---------AGGG------------GAGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 150410 0.66 0.91244
Target:  5'- --uGGgcGCGCAuggccugagUCCCuacuuuuaggggCUCCUGGGGGg -3'
miRNA:   3'- cuuUCuaCGCGU---------AGGG------------GAGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 153488 0.66 0.91244
Target:  5'- --uGGgcGCGCAuggccugagUCCCuacuuuuaggggCUCCUGGGGGg -3'
miRNA:   3'- cuuUCuaCGCGU---------AGGG------------GAGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 156566 0.66 0.91244
Target:  5'- --uGGgcGCGCAuggccugagUCCCuacuuuuaggggCUCCUGGGGGg -3'
miRNA:   3'- cuuUCuaCGCGU---------AGGG------------GAGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 104192 0.66 0.900063
Target:  5'- uGGAAGAcGUGC-UCCCCUUCUGcaucugcacGGGGa -3'
miRNA:   3'- -CUUUCUaCGCGuAGGGGAGGAC---------CCUC- -5'
28820 5' -55.7 NC_006146.1 + 21889 0.67 0.893522
Target:  5'- gGAAGGAUGCGaagAUUCCCgCCgagGaGGAGg -3'
miRNA:   3'- -CUUUCUACGCg--UAGGGGaGGa--C-CCUC- -5'
28820 5' -55.7 NC_006146.1 + 95206 0.67 0.893522
Target:  5'- -----cUGCGCugcagCUCCUCCaGGGAGg -3'
miRNA:   3'- cuuucuACGCGua---GGGGAGGaCCCUC- -5'
28820 5' -55.7 NC_006146.1 + 62299 0.67 0.886751
Target:  5'- ------cGCGgA-CCCCUaCCUGGGAGa -3'
miRNA:   3'- cuuucuaCGCgUaGGGGA-GGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 106521 0.67 0.879754
Target:  5'- aGAcAGGUggGCGCAUCCCCUggUGGGc- -3'
miRNA:   3'- -CUuUCUA--CGCGUAGGGGAggACCCuc -5'
28820 5' -55.7 NC_006146.1 + 37791 0.67 0.868099
Target:  5'- aGAAGAUGCauguucagGCGUCCUCUCCcgguggugcugaauaUGGGGc -3'
miRNA:   3'- cUUUCUACG--------CGUAGGGGAGG---------------ACCCUc -5'
28820 5' -55.7 NC_006146.1 + 55818 0.68 0.857452
Target:  5'- uGGAAGAgGC-CGUCCCggCCUGGGuGg -3'
miRNA:   3'- -CUUUCUaCGcGUAGGGgaGGACCCuC- -5'
28820 5' -55.7 NC_006146.1 + 129764 0.68 0.857452
Target:  5'- cAGAGucaGCGCAcgCCCCUCCcccGGGAc -3'
miRNA:   3'- cUUUCua-CGCGUa-GGGGAGGa--CCCUc -5'
28820 5' -55.7 NC_006146.1 + 145669 0.68 0.814539
Target:  5'- aGGAAGAUcuggggcucgcugGUGUucaaauuGUCCCCgCCUGGGAGc -3'
miRNA:   3'- -CUUUCUA-------------CGCG-------UAGGGGaGGACCCUC- -5'
28820 5' -55.7 NC_006146.1 + 44505 0.69 0.798578
Target:  5'- gGAGAGG-GCGCAgaggCCCCUggUGGGAu -3'
miRNA:   3'- -CUUUCUaCGCGUa---GGGGAggACCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.