miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28821 3' -53 NC_006146.1 + 141636 0.66 0.970727
Target:  5'- gUCCUUuuaGGCAGCgguuuucaggUGaCCUAucUGGAGCa -3'
miRNA:   3'- aAGGGA---CCGUCGa---------AC-GGAUu-AUCUCG- -5'
28821 3' -53 NC_006146.1 + 118838 0.66 0.967626
Target:  5'- cUCCCUGGCAucCUUGCCcaca--AGCa -3'
miRNA:   3'- aAGGGACCGUc-GAACGGauuaucUCG- -5'
28821 3' -53 NC_006146.1 + 1492 0.66 0.967626
Target:  5'- cUCCUgaccaUGGCAGCcgGCCUcguuugGGUGGuGCu -3'
miRNA:   3'- aAGGG-----ACCGUCGaaCGGA------UUAUCuCG- -5'
28821 3' -53 NC_006146.1 + 86503 0.66 0.967626
Target:  5'- -gCCUugaggGGCAGCUggGCUUGA-GGGGCa -3'
miRNA:   3'- aaGGGa----CCGUCGAa-CGGAUUaUCUCG- -5'
28821 3' -53 NC_006146.1 + 47761 0.66 0.9643
Target:  5'- -gCCCUGGCgAGUacgGCCUcc-AGGGCc -3'
miRNA:   3'- aaGGGACCG-UCGaa-CGGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 168133 0.66 0.9643
Target:  5'- cUUCCCUGaCauccgGGCUuggGCCUGcgAGGGCc -3'
miRNA:   3'- -AAGGGACcG-----UCGAa--CGGAUuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 11606 0.66 0.960741
Target:  5'- -cUCCUGGCcccuGUUUGCCgacugcgAGGGCc -3'
miRNA:   3'- aaGGGACCGu---CGAACGGauua---UCUCG- -5'
28821 3' -53 NC_006146.1 + 72498 0.66 0.960741
Target:  5'- gUgCCUGGCuGCagcGCCUGcggaGGAGCg -3'
miRNA:   3'- aAgGGACCGuCGaa-CGGAUua--UCUCG- -5'
28821 3' -53 NC_006146.1 + 56669 0.66 0.956944
Target:  5'- cUCCCUGaGguGCcggGCCcccUGGGGCu -3'
miRNA:   3'- aAGGGAC-CguCGaa-CGGauuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 106474 0.66 0.956944
Target:  5'- gUCuCCUGGCAGCguacGCCgccGUGGccccGGCc -3'
miRNA:   3'- aAG-GGACCGUCGaa--CGGau-UAUC----UCG- -5'
28821 3' -53 NC_006146.1 + 17600 0.66 0.956944
Target:  5'- --aCCUGGCccgGGCcuggUGCCU---GGAGCa -3'
miRNA:   3'- aagGGACCG---UCGa---ACGGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 141881 0.67 0.948618
Target:  5'- cUUCCUUGGUccg-UGCCUA--GGAGCg -3'
miRNA:   3'- -AAGGGACCGucgaACGGAUuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 167636 0.67 0.948618
Target:  5'- gUCCCgcggGGCccGGCgcgUGCCg---GGGGCc -3'
miRNA:   3'- aAGGGa---CCG--UCGa--ACGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 101061 0.67 0.94408
Target:  5'- cUCCCgagGGCcacgGGCUcaUGCU--GUGGGGCa -3'
miRNA:   3'- aAGGGa--CCG----UCGA--ACGGauUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 168325 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 167393 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 169257 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 170188 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 12287 0.67 0.939287
Target:  5'- -aCCuaCUGGCAGCUgaaccagaaCCUGcUGGAGCg -3'
miRNA:   3'- aaGG--GACCGUCGAac-------GGAUuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 70146 0.67 0.934239
Target:  5'- aUCUCUGGaGGCU--CCaGAUAGAGCa -3'
miRNA:   3'- aAGGGACCgUCGAacGGaUUAUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.