miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28821 3' -53 NC_006146.1 + 82549 1.09 0.004678
Target:  5'- uUUCCCUGGCAGCUUGCCUAAUAGAGCc -3'
miRNA:   3'- -AAGGGACCGUCGAACGGAUUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 161537 0.75 0.585573
Target:  5'- -aCCCUGGCAGC-UGCCUGugaccuGCg -3'
miRNA:   3'- aaGGGACCGUCGaACGGAUuaucu-CG- -5'
28821 3' -53 NC_006146.1 + 45059 0.74 0.61738
Target:  5'- cUCCCUaggGGCGGCUgaggUGCCUcGUGGGGa -3'
miRNA:   3'- aAGGGA---CCGUCGA----ACGGAuUAUCUCg -5'
28821 3' -53 NC_006146.1 + 123302 0.74 0.628018
Target:  5'- aUCCCUGGCGGCc-GCCgAGUGGAu- -3'
miRNA:   3'- aAGGGACCGUCGaaCGGaUUAUCUcg -5'
28821 3' -53 NC_006146.1 + 120500 0.72 0.710386
Target:  5'- gUCCCUGGCGGCcgaggacgcgaGCCgcGUGGAuGCg -3'
miRNA:   3'- aAGGGACCGUCGaa---------CGGauUAUCU-CG- -5'
28821 3' -53 NC_006146.1 + 87929 0.72 0.713497
Target:  5'- uUUCCCcGGCGGCuUUGUCUAAguuuguguggaaaugAGAGCc -3'
miRNA:   3'- -AAGGGaCCGUCG-AACGGAUUa--------------UCUCG- -5'
28821 3' -53 NC_006146.1 + 67943 0.72 0.753227
Target:  5'- gUCCCggaugGGCGGC-UGCCcucggAGGGCg -3'
miRNA:   3'- aAGGGa----CCGUCGaACGGauua-UCUCG- -5'
28821 3' -53 NC_006146.1 + 33531 0.7 0.809801
Target:  5'- cUCCCUaGGUugugcccGGCUUGCCUGGcccUGGuGCu -3'
miRNA:   3'- aAGGGA-CCG-------UCGAACGGAUU---AUCuCG- -5'
28821 3' -53 NC_006146.1 + 2470 0.7 0.819738
Target:  5'- gUCUUUGGCGGUgugGCCggcgGGGGCa -3'
miRNA:   3'- aAGGGACCGUCGaa-CGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 139237 0.7 0.828578
Target:  5'- gUCCCUgGGCuGUUUGCCUGA-GGuGUg -3'
miRNA:   3'- aAGGGA-CCGuCGAACGGAUUaUCuCG- -5'
28821 3' -53 NC_006146.1 + 134684 0.7 0.853907
Target:  5'- cUCCCcGGcCGGCUUGCgCUcccggGGAGCc -3'
miRNA:   3'- aAGGGaCC-GUCGAACG-GAuua--UCUCG- -5'
28821 3' -53 NC_006146.1 + 116132 0.69 0.861925
Target:  5'- cUCCCUGGCGGCccUGCgCUGGcUGGucuccuucGGCa -3'
miRNA:   3'- aAGGGACCGUCGa-ACG-GAUU-AUC--------UCG- -5'
28821 3' -53 NC_006146.1 + 124520 0.69 0.861925
Target:  5'- -gCCCUGGCgagGGaCggggGCCUGggGGAGCu -3'
miRNA:   3'- aaGGGACCG---UC-Gaa--CGGAUuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 65124 0.69 0.891698
Target:  5'- -gCCCUGGguGCccuuggUGCUcu-UGGAGCu -3'
miRNA:   3'- aaGGGACCguCGa-----ACGGauuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 128543 0.68 0.898538
Target:  5'- -aCCCUGGCGGCgcgggagauCCU---GGAGCg -3'
miRNA:   3'- aaGGGACCGUCGaac------GGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 30380 0.68 0.898538
Target:  5'- cUCCCagGGCuaGGUUUGCU--GUAGGGCc -3'
miRNA:   3'- aAGGGa-CCG--UCGAACGGauUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 123931 0.68 0.905128
Target:  5'- aUUCCUGGCGGCggccggGCCggcgaAAUAcgcGGGCa -3'
miRNA:   3'- aAGGGACCGUCGaa----CGGa----UUAU---CUCG- -5'
28821 3' -53 NC_006146.1 + 19950 0.68 0.905128
Target:  5'- cUCCCUgGGCAGaucaggGCCg---GGGGCg -3'
miRNA:   3'- aAGGGA-CCGUCgaa---CGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 158928 0.68 0.911464
Target:  5'- -cCCCUGGCAGaacUGCaggUAAUAG-GCg -3'
miRNA:   3'- aaGGGACCGUCga-ACGg--AUUAUCuCG- -5'
28821 3' -53 NC_006146.1 + 163506 0.68 0.916948
Target:  5'- gUUUCUGGCAGUggaugcauauguuUUGCCUAGU--GGCa -3'
miRNA:   3'- aAGGGACCGUCG-------------AACGGAUUAucUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.