miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28821 3' -53 NC_006146.1 + 1492 0.66 0.967626
Target:  5'- cUCCUgaccaUGGCAGCcgGCCUcguuugGGUGGuGCu -3'
miRNA:   3'- aAGGG-----ACCGUCGaaCGGA------UUAUCuCG- -5'
28821 3' -53 NC_006146.1 + 2470 0.7 0.819738
Target:  5'- gUCUUUGGCGGUgugGCCggcgGGGGCa -3'
miRNA:   3'- aAGGGACCGUCGaa-CGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 11606 0.66 0.960741
Target:  5'- -cUCCUGGCcccuGUUUGCCgacugcgAGGGCc -3'
miRNA:   3'- aaGGGACCGu---CGAACGGauua---UCUCG- -5'
28821 3' -53 NC_006146.1 + 12287 0.67 0.939287
Target:  5'- -aCCuaCUGGCAGCUgaaccagaaCCUGcUGGAGCg -3'
miRNA:   3'- aaGG--GACCGUCGAac-------GGAUuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 17600 0.66 0.956944
Target:  5'- --aCCUGGCccgGGCcuggUGCCU---GGAGCa -3'
miRNA:   3'- aagGGACCG---UCGa---ACGGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 19950 0.68 0.905128
Target:  5'- cUCCCUgGGCAGaucaggGCCg---GGGGCg -3'
miRNA:   3'- aAGGGA-CCGUCgaa---CGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 30380 0.68 0.898538
Target:  5'- cUCCCagGGCuaGGUUUGCU--GUAGGGCc -3'
miRNA:   3'- aAGGGa-CCG--UCGAACGGauUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 33531 0.7 0.809801
Target:  5'- cUCCCUaGGUugugcccGGCUUGCCUGGcccUGGuGCu -3'
miRNA:   3'- aAGGGA-CCG-------UCGAACGGAUU---AUCuCG- -5'
28821 3' -53 NC_006146.1 + 45059 0.74 0.61738
Target:  5'- cUCCCUaggGGCGGCUgaggUGCCUcGUGGGGa -3'
miRNA:   3'- aAGGGA---CCGUCGA----ACGGAuUAUCUCg -5'
28821 3' -53 NC_006146.1 + 47761 0.66 0.9643
Target:  5'- -gCCCUGGCgAGUacgGCCUcc-AGGGCc -3'
miRNA:   3'- aaGGGACCG-UCGaa-CGGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 56669 0.66 0.956944
Target:  5'- cUCCCUGaGguGCcggGCCcccUGGGGCu -3'
miRNA:   3'- aAGGGAC-CguCGaa-CGGauuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 60577 0.68 0.921648
Target:  5'- uUUCCCguuaccugagagcaUGGCcuccguGUUUGCCUGcUGGGGCu -3'
miRNA:   3'- -AAGGG--------------ACCGu-----CGAACGGAUuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 65124 0.69 0.891698
Target:  5'- -gCCCUGGguGCccuuggUGCUcu-UGGAGCu -3'
miRNA:   3'- aaGGGACCguCGa-----ACGGauuAUCUCG- -5'
28821 3' -53 NC_006146.1 + 67943 0.72 0.753227
Target:  5'- gUCCCggaugGGCGGC-UGCCcucggAGGGCg -3'
miRNA:   3'- aAGGGa----CCGUCGaACGGauua-UCUCG- -5'
28821 3' -53 NC_006146.1 + 70146 0.67 0.934239
Target:  5'- aUCUCUGGaGGCU--CCaGAUAGAGCa -3'
miRNA:   3'- aAGGGACCgUCGAacGGaUUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 72498 0.66 0.960741
Target:  5'- gUgCCUGGCuGCagcGCCUGcggaGGAGCg -3'
miRNA:   3'- aAgGGACCGuCGaa-CGGAUua--UCUCG- -5'
28821 3' -53 NC_006146.1 + 82549 1.09 0.004678
Target:  5'- uUUCCCUGGCAGCUUGCCUAAUAGAGCc -3'
miRNA:   3'- -AAGGGACCGUCGAACGGAUUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 86503 0.66 0.967626
Target:  5'- -gCCUugaggGGCAGCUggGCUUGA-GGGGCa -3'
miRNA:   3'- aaGGGa----CCGUCGAa-CGGAUUaUCUCG- -5'
28821 3' -53 NC_006146.1 + 87929 0.72 0.713497
Target:  5'- uUUCCCcGGCGGCuUUGUCUAAguuuguguggaaaugAGAGCc -3'
miRNA:   3'- -AAGGGaCCGUCG-AACGGAUUa--------------UCUCG- -5'
28821 3' -53 NC_006146.1 + 95443 0.68 0.923368
Target:  5'- aUCUCUGG-GGCcUGCCUc-UGGAGCu -3'
miRNA:   3'- aAGGGACCgUCGaACGGAuuAUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.