miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28821 3' -53 NC_006146.1 + 161537 0.75 0.585573
Target:  5'- -aCCCUGGCAGC-UGCCUGugaccuGCg -3'
miRNA:   3'- aaGGGACCGUCGaACGGAUuaucu-CG- -5'
28821 3' -53 NC_006146.1 + 47761 0.66 0.9643
Target:  5'- -gCCCUGGCgAGUacgGCCUcc-AGGGCc -3'
miRNA:   3'- aaGGGACCG-UCGaa-CGGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 118838 0.66 0.967626
Target:  5'- cUCCCUGGCAucCUUGCCcaca--AGCa -3'
miRNA:   3'- aAGGGACCGUc-GAACGGauuaucUCG- -5'
28821 3' -53 NC_006146.1 + 141636 0.66 0.970727
Target:  5'- gUCCUUuuaGGCAGCgguuuucaggUGaCCUAucUGGAGCa -3'
miRNA:   3'- aAGGGA---CCGUCGa---------AC-GGAUu-AUCUCG- -5'
28821 3' -53 NC_006146.1 + 139237 0.7 0.828578
Target:  5'- gUCCCUgGGCuGUUUGCCUGA-GGuGUg -3'
miRNA:   3'- aAGGGA-CCGuCGAACGGAUUaUCuCG- -5'
28821 3' -53 NC_006146.1 + 134684 0.7 0.853907
Target:  5'- cUCCCcGGcCGGCUUGCgCUcccggGGAGCc -3'
miRNA:   3'- aAGGGaCC-GUCGAACG-GAuua--UCUCG- -5'
28821 3' -53 NC_006146.1 + 30380 0.68 0.898538
Target:  5'- cUCCCagGGCuaGGUUUGCU--GUAGGGCc -3'
miRNA:   3'- aAGGGa-CCG--UCGAACGGauUAUCUCG- -5'
28821 3' -53 NC_006146.1 + 128543 0.68 0.898538
Target:  5'- -aCCCUGGCGGCgcgggagauCCU---GGAGCg -3'
miRNA:   3'- aaGGGACCGUCGaac------GGAuuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 167393 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 167636 0.67 0.948618
Target:  5'- gUCCCgcggGGCccGGCgcgUGCCg---GGGGCc -3'
miRNA:   3'- aAGGGa---CCG--UCGa--ACGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 169257 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 163506 0.68 0.916948
Target:  5'- gUUUCUGGCAGUggaugcauauguuUUGCCUAGU--GGCa -3'
miRNA:   3'- aAGGGACCGUCG-------------AACGGAUUAucUCG- -5'
28821 3' -53 NC_006146.1 + 45059 0.74 0.61738
Target:  5'- cUCCCUaggGGCGGCUgaggUGCCUcGUGGGGa -3'
miRNA:   3'- aAGGGA---CCGUCGA----ACGGAuUAUCUCg -5'
28821 3' -53 NC_006146.1 + 170188 0.67 0.939287
Target:  5'- cUCCCgagGGCggGGCcgggGCCUGGcgGGGGCc -3'
miRNA:   3'- aAGGGa--CCG--UCGaa--CGGAUUa-UCUCG- -5'
28821 3' -53 NC_006146.1 + 33531 0.7 0.809801
Target:  5'- cUCCCUaGGUugugcccGGCUUGCCUGGcccUGGuGCu -3'
miRNA:   3'- aAGGGA-CCG-------UCGAACGGAUU---AUCuCG- -5'
28821 3' -53 NC_006146.1 + 158928 0.68 0.911464
Target:  5'- -cCCCUGGCAGaacUGCaggUAAUAG-GCg -3'
miRNA:   3'- aaGGGACCGUCga-ACGg--AUUAUCuCG- -5'
28821 3' -53 NC_006146.1 + 141881 0.67 0.948618
Target:  5'- cUUCCUUGGUccg-UGCCUA--GGAGCg -3'
miRNA:   3'- -AAGGGACCGucgaACGGAUuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 1492 0.66 0.967626
Target:  5'- cUCCUgaccaUGGCAGCcgGCCUcguuugGGUGGuGCu -3'
miRNA:   3'- aAGGG-----ACCGUCGaaCGGA------UUAUCuCG- -5'
28821 3' -53 NC_006146.1 + 2470 0.7 0.819738
Target:  5'- gUCUUUGGCGGUgugGCCggcgGGGGCa -3'
miRNA:   3'- aAGGGACCGUCGaa-CGGauuaUCUCG- -5'
28821 3' -53 NC_006146.1 + 65124 0.69 0.891698
Target:  5'- -gCCCUGGguGCccuuggUGCUcu-UGGAGCu -3'
miRNA:   3'- aaGGGACCguCGa-----ACGGauuAUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.