miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28821 5' -49 NC_006146.1 + 150494 0.66 0.999206
Target:  5'- aGCcgUCCcugucgGAGGCGgagGGCAuGGGuAGGAu -3'
miRNA:   3'- -CGuaAGGua----UUCCGU---UUGU-CCC-UCCU- -5'
28821 5' -49 NC_006146.1 + 165220 0.66 0.999025
Target:  5'- aGCAccCCGUGuaggGGGCAAAgGcGGAGGGa -3'
miRNA:   3'- -CGUaaGGUAU----UCCGUUUgUcCCUCCU- -5'
28821 5' -49 NC_006146.1 + 53038 0.66 0.999025
Target:  5'- cGCGgccgCCgccgagagGUAAGGgGGGCGGGuGGGGAa -3'
miRNA:   3'- -CGUaa--GG--------UAUUCCgUUUGUCC-CUCCU- -5'
28821 5' -49 NC_006146.1 + 52351 0.66 0.999025
Target:  5'- gGCGgcgUCCuuuuGGCAGugGGGGucGAa -3'
miRNA:   3'- -CGUa--AGGuauuCCGUUugUCCCucCU- -5'
28821 5' -49 NC_006146.1 + 126055 0.66 0.999025
Target:  5'- ---cUCCcuuggGUAGGGUAAACGGGcacGAGGGg -3'
miRNA:   3'- cguaAGG-----UAUUCCGUUUGUCC---CUCCU- -5'
28821 5' -49 NC_006146.1 + 2083 0.66 0.999025
Target:  5'- gGCAUUCUAUuGGGCAAcagcgaGCAaGGAGa- -3'
miRNA:   3'- -CGUAAGGUAuUCCGUU------UGUcCCUCcu -5'
28821 5' -49 NC_006146.1 + 33990 0.66 0.99881
Target:  5'- cGCuggUCCGgugcaccuGGaAGGCAGGGGGGGg -3'
miRNA:   3'- -CGua-AGGUauu-----CCgUUUGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 52018 0.66 0.998555
Target:  5'- ----aCC-UGAGGCAGuccGCGGcGGAGGGg -3'
miRNA:   3'- cguaaGGuAUUCCGUU---UGUC-CCUCCU- -5'
28821 5' -49 NC_006146.1 + 42257 0.66 0.998555
Target:  5'- cGCcgUCCccgaAUGcgggaggaggauGGGUgguGGCGGGGAGGAg -3'
miRNA:   3'- -CGuaAGG----UAU------------UCCGu--UUGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 39711 0.66 0.998555
Target:  5'- gGCAUagUCCucgaagAAGGC-AACGGGGGccucGGAg -3'
miRNA:   3'- -CGUA--AGGua----UUCCGuUUGUCCCU----CCU- -5'
28821 5' -49 NC_006146.1 + 145042 0.66 0.998256
Target:  5'- ---cUCUGgccGGGCGGGCGGGGAcGGGg -3'
miRNA:   3'- cguaAGGUau-UCCGUUUGUCCCU-CCU- -5'
28821 5' -49 NC_006146.1 + 144501 0.66 0.998256
Target:  5'- aCGggCC-UGGGGUGGcCGGGGAGGGg -3'
miRNA:   3'- cGUaaGGuAUUCCGUUuGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 141964 0.66 0.998256
Target:  5'- ---cUCUGgccGGGCGGGCGGGGAcGGGg -3'
miRNA:   3'- cguaAGGUau-UCCGUUUGUCCCU-CCU- -5'
28821 5' -49 NC_006146.1 + 141423 0.66 0.998256
Target:  5'- aCGggCC-UGGGGUGGcCGGGGAGGGg -3'
miRNA:   3'- cGUaaGGuAUUCCGUUuGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 148120 0.66 0.998256
Target:  5'- ---cUCUGgccGGGCGGGCGGGGAcGGGg -3'
miRNA:   3'- cguaAGGUau-UCCGUUUGUCCCU-CCU- -5'
28821 5' -49 NC_006146.1 + 169480 0.66 0.998256
Target:  5'- ----cCUcgGGGGCGGAgGGGGGGGu -3'
miRNA:   3'- cguaaGGuaUUCCGUUUgUCCCUCCu -5'
28821 5' -49 NC_006146.1 + 168548 0.66 0.998256
Target:  5'- ----cCUcgGGGGCGGAgGGGGGGGu -3'
miRNA:   3'- cguaaGGuaUUCCGUUUgUCCCUCCu -5'
28821 5' -49 NC_006146.1 + 150657 0.66 0.998256
Target:  5'- aCGggCC-UGGGGUGGcCGGGGAGGGg -3'
miRNA:   3'- cGUaaGGuAUUCCGUUuGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 153734 0.66 0.998256
Target:  5'- aCGggCC-UGGGGUGGcCGGGGAGGGg -3'
miRNA:   3'- cGUaaGGuAUUCCGUUuGUCCCUCCU- -5'
28821 5' -49 NC_006146.1 + 154276 0.66 0.998256
Target:  5'- ---cUCUGgccGGGCGGGCGGGGAcGGGg -3'
miRNA:   3'- cguaAGGUau-UCCGUUUGUCCCU-CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.