miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 3' -44.2 NC_006146.1 + 115172 0.66 1
Target:  5'- --aGAUCUUGGGcguGUacgCGGAG-GCCa -3'
miRNA:   3'- cuaCUAGAAUCCau-CAa--GUUUCuCGG- -5'
28822 3' -44.2 NC_006146.1 + 11152 0.66 1
Target:  5'- uGGUGGUCacggAGGca-UUCAAGGAGCg -3'
miRNA:   3'- -CUACUAGaa--UCCaucAAGUUUCUCGg -5'
28822 3' -44.2 NC_006146.1 + 168963 0.66 1
Target:  5'- -cUGAUCggGGGUucgauaauAGcUCGuAGAGCCu -3'
miRNA:   3'- cuACUAGaaUCCA--------UCaAGUuUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 125482 0.66 1
Target:  5'- aGGUGAUUgagcauGGUAGUUuuucCAAcccccGGAGCCc -3'
miRNA:   3'- -CUACUAGaau---CCAUCAA----GUU-----UCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 9012 0.66 1
Target:  5'- -uUGuUCUUGGGUGGUgcuGAAGuGCUc -3'
miRNA:   3'- cuACuAGAAUCCAUCAag-UUUCuCGG- -5'
28822 3' -44.2 NC_006146.1 + 157920 0.66 1
Target:  5'- --gGGUCUUGuGGUAGguguugaggaauUUCAuguAGGGCCc -3'
miRNA:   3'- cuaCUAGAAU-CCAUC------------AAGUu--UCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 139266 0.67 0.999997
Target:  5'- uGUGA-CUgcugAGGUGG--CAGAGGGCCc -3'
miRNA:   3'- cUACUaGAa---UCCAUCaaGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 64559 0.68 0.99999
Target:  5'- --gGGUgUUGGGcAGgaagCAGGGGGCCa -3'
miRNA:   3'- cuaCUAgAAUCCaUCaa--GUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 113689 0.68 0.999982
Target:  5'- uGGUGAUCUUauucAGGUAGgugcUCuugauguucuccaccAGGGGGCCc -3'
miRNA:   3'- -CUACUAGAA----UCCAUCa---AG---------------UUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 52370 0.68 0.99998
Target:  5'- uGggGGUCgaagAGGUAG---AAGGAGCCg -3'
miRNA:   3'- -CuaCUAGaa--UCCAUCaagUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 71171 0.68 0.99998
Target:  5'- uGUGG-CUUGGGUGGUgguagcCGGuGGGCCa -3'
miRNA:   3'- cUACUaGAAUCCAUCAa-----GUUuCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 159964 0.69 0.999972
Target:  5'- uGUGGUaggAGGUGGcgCGcAGGAGCCc -3'
miRNA:   3'- cUACUAgaaUCCAUCaaGU-UUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 102400 0.7 0.999879
Target:  5'- uGGUGGuaUCUgucccUGGGgcGgcCAAAGAGCCa -3'
miRNA:   3'- -CUACU--AGA-----AUCCauCaaGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 113661 0.7 0.999795
Target:  5'- uGAUGGUCgacgagAGGUGGcUCGGGcccGGGCCc -3'
miRNA:   3'- -CUACUAGaa----UCCAUCaAGUUU---CUCGG- -5'
28822 3' -44.2 NC_006146.1 + 12953 0.71 0.999572
Target:  5'- cGGUGGcCUUgGGGUAGcucuggagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAA-UCCAUCa-------AGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 28342 0.71 0.999562
Target:  5'- cGGUGGcCUUGGGguagcucUGGgagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAAUCC-------AUCa--AGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 25264 0.71 0.999562
Target:  5'- cGGUGGcCUUGGGguagcucUGGgagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAAUCC-------AUCa--AGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 22186 0.71 0.999562
Target:  5'- cGGUGGcCUUGGGguagcucUGGgagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAAUCC-------AUCa--AGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 16030 0.71 0.999562
Target:  5'- cGGUGGcCUUGGGguagcucUGGgagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAAUCC-------AUCa--AGUUUCUCGG- -5'
28822 3' -44.2 NC_006146.1 + 19108 0.71 0.999562
Target:  5'- cGGUGGcCUUGGGguagcucUGGgagUCAGAGAGUCg -3'
miRNA:   3'- -CUACUaGAAUCC-------AUCa--AGUUUCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.