miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 14321 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 17399 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 20477 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 26633 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 23555 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 44038 0.66 0.839818
Target:  5'- gAGGGCCCCgcuuuuuuagcgaugUAuguuggGGCgCCU-GCAUGCCGg -3'
miRNA:   3'- -UCCCGGGG---------------AU------UCGgGGAuUGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 22008 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 18931 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 25086 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 28164 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 61973 0.66 0.8366
Target:  5'- gGGGGCCgUUGAGgCCC--ACGuCACCu -3'
miRNA:   3'- -UCCCGGgGAUUCgGGGauUGU-GUGGc -5'
28822 5' -58.5 NC_006146.1 + 71528 0.66 0.8366
Target:  5'- --cGCUCCUGGGCCUC-AACGCGCgGc -3'
miRNA:   3'- uccCGGGGAUUCGGGGaUUGUGUGgC- -5'
28822 5' -58.5 NC_006146.1 + 164670 0.66 0.8366
Target:  5'- aAGGGCCCgaauGGaCCCCUGucuC-CACCa -3'
miRNA:   3'- -UCCCGGGgau-UC-GGGGAUu--GuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 47317 0.66 0.8366
Target:  5'- cGGGCCuCCUGgaugauGGCCUCcAGCcgggccagGCGCCGu -3'
miRNA:   3'- uCCCGG-GGAU------UCGGGGaUUG--------UGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 15853 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 12774 0.66 0.8366
Target:  5'- cGGGCgCCaccAGGUCCC-AACAC-CCGg -3'
miRNA:   3'- uCCCGgGGa--UUCGGGGaUUGUGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34644 0.66 0.8366
Target:  5'- gAGGuaUCCUAAGCUCCgccccuAUAUACCa -3'
miRNA:   3'- -UCCcgGGGAUUCGGGGau----UGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 20938 0.66 0.8366
Target:  5'- -aGGCCCU--GGCCCCcacuccCACGCCu -3'
miRNA:   3'- ucCCGGGGauUCGGGGauu---GUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 18882 0.66 0.8366
Target:  5'- gGGGGCCUC--AGCCCCcacuguGCuucUACCGa -3'
miRNA:   3'- -UCCCGGGGauUCGGGGau----UGu--GUGGC- -5'
28822 5' -58.5 NC_006146.1 + 22760 0.66 0.8366
Target:  5'- cGGGCCCUgaccagcacgAAGCCCaugcGGCACuCCa -3'
miRNA:   3'- uCCCGGGGa---------UUCGGGga--UUGUGuGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.