miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 14321 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 17399 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 20477 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 26633 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 23555 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 35070 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34977 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34792 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34699 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34606 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34513 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35163 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35256 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35349 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35442 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35628 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35721 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 61934 0.66 0.82843
Target:  5'- aGGGGCUCCaGGGCCCUgguC-CACgGg -3'
miRNA:   3'- -UCCCGGGGaUUCGGGGauuGuGUGgC- -5'
28822 5' -58.5 NC_006146.1 + 20938 0.66 0.8366
Target:  5'- -aGGCCCU--GGCCCCcacuccCACGCCu -3'
miRNA:   3'- ucCCGGGGauUCGGGGauu---GUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 18882 0.66 0.8366
Target:  5'- gGGGGCCUC--AGCCCCcacuguGCuucUACCGa -3'
miRNA:   3'- -UCCCGGGGauUCGGGGau----UGu--GUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.