miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 82355 1.08 0.002251
Target:  5'- cAGGGCCCCUAAGCCCCUAACACACCGc -3'
miRNA:   3'- -UCCCGGGGAUUCGGGGAUUGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 108975 0.84 0.092953
Target:  5'- cAGGGCCCUgGAGCCCCUGAUggccCGCCGg -3'
miRNA:   3'- -UCCCGGGGaUUCGGGGAUUGu---GUGGC- -5'
28822 5' -58.5 NC_006146.1 + 23796 0.81 0.151171
Target:  5'- uGGGGCCCgCUGAGCCCC-AGCuCGCCc -3'
miRNA:   3'- -UCCCGGG-GAUUCGGGGaUUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 105824 0.81 0.151171
Target:  5'- uAGGGCCCCUccuGCCCCgcGC-CGCCGa -3'
miRNA:   3'- -UCCCGGGGAuu-CGGGGauUGuGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 112660 0.79 0.189053
Target:  5'- cGGGCCCCUuuuauAGCCCUUGucCACGCCc -3'
miRNA:   3'- uCCCGGGGAu----UCGGGGAUu-GUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 2275 0.76 0.277004
Target:  5'- cGGGCCCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- uCCCGGGGa---UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 11631 0.76 0.277004
Target:  5'- gAGGGCCCCgAGGCCCgCgUGGCggcguuGCACCGa -3'
miRNA:   3'- -UCCCGGGGaUUCGGG-G-AUUG------UGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 3207 0.76 0.277004
Target:  5'- cGGGCCCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- uCCCGGGGa---UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 1343 0.76 0.277004
Target:  5'- cGGGCCCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- uCCCGGGGa---UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 151162 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 145006 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 148084 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 154240 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 157318 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 141928 0.76 0.292712
Target:  5'- gAGGGCCCUgggAGGCCCCUGucCGCgagggagagucucugGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGGAUu-GUG---------------UGGC- -5'
28822 5' -58.5 NC_006146.1 + 61498 0.75 0.324744
Target:  5'- cAGGGCUCCgaggAGGCCCCUGcCGC-CCu -3'
miRNA:   3'- -UCCCGGGGa---UUCGGGGAUuGUGuGGc -5'
28822 5' -58.5 NC_006146.1 + 115133 0.75 0.332043
Target:  5'- uGGuGGCCUCgcuGCCCCUGGCcCGCCGc -3'
miRNA:   3'- -UC-CCGGGGauuCGGGGAUUGuGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 129049 0.75 0.332043
Target:  5'- cGaGGCCCCgguAGCCCCUGGcCACGgcCCGg -3'
miRNA:   3'- uC-CCGGGGau-UCGGGGAUU-GUGU--GGC- -5'
28822 5' -58.5 NC_006146.1 + 71868 0.75 0.339462
Target:  5'- cGGGCCCUgggGGGCCUCU-ACACgGCCGu -3'
miRNA:   3'- uCCCGGGGa--UUCGGGGAuUGUG-UGGC- -5'
28822 5' -58.5 NC_006146.1 + 14182 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.