miRNA display CGI


Results 21 - 40 of 338 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 20938 0.66 0.8366
Target:  5'- -aGGCCCU--GGCCCCcacuccCACGCCu -3'
miRNA:   3'- ucCCGGGGauUCGGGGauu---GUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 118995 0.66 0.8366
Target:  5'- cGGuGCCUCggAGGCCCCcgccGACGCAgCCu -3'
miRNA:   3'- uCC-CGGGGa-UUCGGGGa---UUGUGU-GGc -5'
28822 5' -58.5 NC_006146.1 + 33584 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 33491 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 4243 0.66 0.82843
Target:  5'- cGGGGaauuCUCCgcu-CCCCUGAuCACGCCGg -3'
miRNA:   3'- -UCCC----GGGGauucGGGGAUU-GUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 73435 0.66 0.82843
Target:  5'- cGGGCCCCUuGGCaCCggaUGACaACAUgGa -3'
miRNA:   3'- uCCCGGGGAuUCG-GGg--AUUG-UGUGgC- -5'
28822 5' -58.5 NC_006146.1 + 33677 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 33770 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 33863 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35349 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35256 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35163 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 35070 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34977 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34420 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34327 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34234 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34141 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 33955 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5'
28822 5' -58.5 NC_006146.1 + 34048 0.66 0.82843
Target:  5'- aGGGGCaCCC--GGCCCCcGGC-C-CCGa -3'
miRNA:   3'- -UCCCG-GGGauUCGGGGaUUGuGuGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.