miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 232 0.73 0.437563
Target:  5'- gGGGcGCCCCU-GGCCUCcccCGCGCCGa -3'
miRNA:   3'- -UCC-CGGGGAuUCGGGGauuGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 380 0.66 0.81158
Target:  5'- cGcGCCCCcucAGGCCCCgcccgccGCGCGCUGg -3'
miRNA:   3'- uCcCGGGGa--UUCGGGGau-----UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 412 0.66 0.81158
Target:  5'- gGGGGUCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- -UCCCGGGga--UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 450 0.69 0.649815
Target:  5'- cGGGacacGCCCCcGGGUCCCccggcACGCGCCGg -3'
miRNA:   3'- -UCC----CGGGGaUUCGGGGau---UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 734 0.72 0.455439
Target:  5'- cGGGaGCCCCcucAGCCCCcGGCcgGCGCCGc -3'
miRNA:   3'- -UCC-CGGGGau-UCGGGGaUUG--UGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 790 0.69 0.639777
Target:  5'- cGGGacGCCCCgccGGCCCCcccuGCGgCGCCGg -3'
miRNA:   3'- -UCC--CGGGGau-UCGGGGau--UGU-GUGGC- -5'
28822 5' -58.5 NC_006146.1 + 850 0.66 0.815002
Target:  5'- -cGGCCCC-GGGCCCUccccgacauccaggGACugGCCGc -3'
miRNA:   3'- ucCCGGGGaUUCGGGGa-------------UUGugUGGC- -5'
28822 5' -58.5 NC_006146.1 + 898 0.68 0.742391
Target:  5'- gGGGGaaggccgcgcgccgcCCCCcGGGaCCCCgggcGCGCGCCGg -3'
miRNA:   3'- -UCCC---------------GGGGaUUC-GGGGau--UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1162 0.7 0.609658
Target:  5'- cGGGCCgCCccgGGGCUCCcc-CGCGCCGa -3'
miRNA:   3'- uCCCGG-GGa--UUCGGGGauuGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1343 0.76 0.277004
Target:  5'- cGGGCCCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- uCCCGGGGa---UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 1381 0.69 0.649815
Target:  5'- cGGGacacGCCCCcGGGUCCCccggcACGCGCCGg -3'
miRNA:   3'- -UCC----CGGGGaUUCGGGGau---UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1665 0.72 0.455439
Target:  5'- cGGGaGCCCCcucAGCCCCcGGCcgGCGCCGc -3'
miRNA:   3'- -UCC-CGGGGau-UCGGGGaUUG--UGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1721 0.69 0.679816
Target:  5'- cGGGacGCCCCgccGGCCCCcccuGCagGCGCCGg -3'
miRNA:   3'- -UCC--CGGGGau-UCGGGGau--UG--UGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1782 0.66 0.815002
Target:  5'- -cGGCCCC-GGGCCCUccccgacauccaggGACugGCCGc -3'
miRNA:   3'- ucCCGGGGaUUCGGGGa-------------UUGugUGGC- -5'
28822 5' -58.5 NC_006146.1 + 1830 0.68 0.742391
Target:  5'- gGGGGaaggccgcgcgccgcCCCCcGGGaCCCCgggcGCGCGCCGg -3'
miRNA:   3'- -UCCC---------------GGGGaUUC-GGGGau--UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 2020 0.68 0.738568
Target:  5'- cGGGGCggcaacgaugaCCCUAGGCCUCa---GCGCCa -3'
miRNA:   3'- -UCCCG-----------GGGAUUCGGGGauugUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 2094 0.7 0.609658
Target:  5'- cGGGCCgCCccgGGGCUCCcc-CGCGCCGa -3'
miRNA:   3'- uCCCGG-GGa--UUCGGGGauuGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 2275 0.76 0.277004
Target:  5'- cGGGCCCCggggAAGCCCCccGCuCGCCc -3'
miRNA:   3'- uCCCGGGGa---UUCGGGGauUGuGUGGc -5'
28822 5' -58.5 NC_006146.1 + 2313 0.69 0.649815
Target:  5'- cGGGacacGCCCCcGGGUCCCccggcACGCGCCGg -3'
miRNA:   3'- -UCC----CGGGGaUUCGGGGau---UGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 2597 0.72 0.455439
Target:  5'- cGGGaGCCCCcucAGCCCCcGGCcgGCGCCGc -3'
miRNA:   3'- -UCC-CGGGGau-UCGGGGaUUG--UGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.