miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28822 5' -58.5 NC_006146.1 + 108975 0.84 0.092953
Target:  5'- cAGGGCCCUgGAGCCCCUGAUggccCGCCGg -3'
miRNA:   3'- -UCCCGGGGaUUCGGGGAUUGu---GUGGC- -5'
28822 5' -58.5 NC_006146.1 + 170427 0.72 0.492324
Target:  5'- gGGGGUCCCgcgGGGCCC--GGCGCguGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGgaUUGUG--UGGC- -5'
28822 5' -58.5 NC_006146.1 + 16457 0.71 0.508415
Target:  5'- cGGGGCCCa-GGGCCCCUAGuCcagaggacggaggaGCACCu -3'
miRNA:   3'- -UCCCGGGgaUUCGGGGAUU-G--------------UGUGGc -5'
28822 5' -58.5 NC_006146.1 + 26633 0.65 0.842213
Target:  5'- cAGGaGCCCCUAaaaguagggacucaGGCCau--GCGCGCCc -3'
miRNA:   3'- -UCC-CGGGGAU--------------UCGGggauUGUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 14182 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5'
28822 5' -58.5 NC_006146.1 + 17260 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5'
28822 5' -58.5 NC_006146.1 + 23416 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5'
28822 5' -58.5 NC_006146.1 + 26494 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5'
28822 5' -58.5 NC_006146.1 + 30210 0.73 0.437563
Target:  5'- gAGGGCCgCUGcGCCCgCcgGGCugGCCGg -3'
miRNA:   3'- -UCCCGGgGAUuCGGG-Ga-UUGugUGGC- -5'
28822 5' -58.5 NC_006146.1 + 169496 0.72 0.492324
Target:  5'- gGGGGUCCCgcgGGGCCC--GGCGCguGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGgaUUGUG--UGGC- -5'
28822 5' -58.5 NC_006146.1 + 155565 0.72 0.492324
Target:  5'- cGGGCUCgCgcgGGGCgCCCgccaggGGCACACCGg -3'
miRNA:   3'- uCCCGGG-Ga--UUCG-GGGa-----UUGUGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 107811 0.74 0.362435
Target:  5'- cAGGGCCCCUucugcguaccAAGCCCCgccuCGC-CCa -3'
miRNA:   3'- -UCCCGGGGA----------UUCGGGGauu-GUGuGGc -5'
28822 5' -58.5 NC_006146.1 + 105824 0.81 0.151171
Target:  5'- uAGGGCCCCUccuGCCCCgcGC-CGCCGa -3'
miRNA:   3'- -UCCCGGGGAuu-CGGGGauUGuGUGGC- -5'
28822 5' -58.5 NC_006146.1 + 167632 0.72 0.492324
Target:  5'- gGGGGUCCCgcgGGGCCC--GGCGCguGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGgaUUGUG--UGGC- -5'
28822 5' -58.5 NC_006146.1 + 112660 0.79 0.189053
Target:  5'- cGGGCCCCUuuuauAGCCCUUGucCACGCCc -3'
miRNA:   3'- uCCCGGGGAu----UCGGGGAUu-GUGUGGc -5'
28822 5' -58.5 NC_006146.1 + 29572 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5'
28822 5' -58.5 NC_006146.1 + 168564 0.72 0.492324
Target:  5'- gGGGGUCCCgcgGGGCCC--GGCGCguGCCGg -3'
miRNA:   3'- -UCCCGGGGa--UUCGGGgaUUGUG--UGGC- -5'
28822 5' -58.5 NC_006146.1 + 13379 0.71 0.508415
Target:  5'- cGGGGCCCa-GGGCCCCUAGuCcagaggacggaggaGCACCu -3'
miRNA:   3'- -UCCCGGGgaUUCGGGGAUU-G--------------UGUGGc -5'
28822 5' -58.5 NC_006146.1 + 61498 0.75 0.324744
Target:  5'- cAGGGCUCCgaggAGGCCCCUGcCGC-CCu -3'
miRNA:   3'- -UCCCGGGGa---UUCGGGGAUuGUGuGGc -5'
28822 5' -58.5 NC_006146.1 + 20338 0.74 0.362435
Target:  5'- uAGGuGCCCuCUGAGCCCCcuuugcccccUGGCAgGCCa -3'
miRNA:   3'- -UCC-CGGG-GAUUCGGGG----------AUUGUgUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.