Results 1 - 20 of 291 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28823 | 3' | -57.4 | NC_006146.1 | + | 154898 | 0.66 | 0.891698 |
Target: 5'- aGGGCCUCGcccgGGCUgaCCg-CGUCCgCCCu -3' miRNA: 3'- gUCCGGAGU----UUGA--GGagGUAGGgGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 168001 | 0.66 | 0.878089 |
Target: 5'- uGGGCgUCAGGC-CCUC--UCCUCCUc -3' miRNA: 3'- gUCCGgAGUUUGaGGAGguAGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 41866 | 0.66 | 0.878089 |
Target: 5'- uGGGCCcagcUCGGGCUgCgCCGUgCCCCg -3' miRNA: 3'- gUCCGG----AGUUUGAgGaGGUAgGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 14370 | 0.66 | 0.870964 |
Target: 5'- uCGGGUCcCGGGaucucgCCUCCcgCUCCCCu -3' miRNA: 3'- -GUCCGGaGUUUga----GGAGGuaGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 156643 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 153565 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 150487 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 147409 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 144331 | 0.66 | 0.870964 |
Target: 5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3' miRNA: 3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 4055 | 0.66 | 0.878089 |
Target: 5'- cCGGGCU------UCCUaagaaCAUCCCCCCa -3' miRNA: 3'- -GUCCGGaguuugAGGAg----GUAGGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 84600 | 0.66 | 0.878089 |
Target: 5'- aGGGCCUCcuACUCCagCCAUgCCg-- -3' miRNA: 3'- gUCCGGAGuuUGAGGa-GGUAgGGggg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 81196 | 0.66 | 0.88432 |
Target: 5'- aAGGCC-CGGACccguguaUCCcaggCCGUUCCCCg -3' miRNA: 3'- gUCCGGaGUUUG-------AGGa---GGUAGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 120711 | 0.66 | 0.890376 |
Target: 5'- cCGGGCCUaccCGAGC-CCgCCGcaagugcaaacgCCCCCCu -3' miRNA: 3'- -GUCCGGA---GUUUGaGGaGGUa-----------GGGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 116463 | 0.66 | 0.885002 |
Target: 5'- gAGGUCUCGGGCguaaUCUCCGagaCCCUCu -3' miRNA: 3'- gUCCGGAGUUUGa---GGAGGUag-GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 18333 | 0.66 | 0.885002 |
Target: 5'- uCGGGCUUCAu-CUCCUUCuuuaaaaaCCCCUu -3' miRNA: 3'- -GUCCGGAGUuuGAGGAGGuag-----GGGGG- -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 3276 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 2344 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 1412 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 481 | 0.66 | 0.885002 |
Target: 5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3' miRNA: 3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5' |
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28823 | 3' | -57.4 | NC_006146.1 | + | 114159 | 0.66 | 0.885002 |
Target: 5'- uCAGGCCcCGGACgUCCcgcgcgaaUUCggCCCCCUg -3' miRNA: 3'- -GUCCGGaGUUUG-AGG--------AGGuaGGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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