miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 81495 1.12 0.001534
Target:  5'- cCAGGCCUCAAACUCCUCCAUCCCCCCa -3'
miRNA:   3'- -GUCCGGAGUUUGAGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 128903 0.82 0.16013
Target:  5'- gCGGGCUUCGuGCUCgUCCG-CCCCCCa -3'
miRNA:   3'- -GUCCGGAGUuUGAGgAGGUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 31306 0.81 0.172574
Target:  5'- gAGGCCUU---CUCCUCCucgCCCCCCg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGGua-GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 24667 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 27745 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 21589 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 18511 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 15433 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 12354 0.8 0.195238
Target:  5'- uGGGCCUCAGGC-CCUCCGcgUCCCCguCCu -3'
miRNA:   3'- gUCCGGAGUUUGaGGAGGU--AGGGG--GG- -5'
28823 3' -57.4 NC_006146.1 + 12320 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 21555 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 27711 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 15399 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 18477 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 24633 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 23286 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 26364 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 17130 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 20208 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 14052 0.79 0.231305
Target:  5'- gCAGGCC--AGGC-CCUCCGUCCUCCCu -3'
miRNA:   3'- -GUCCGGagUUUGaGGAGGUAGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.