miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 481 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 545 0.71 0.613952
Target:  5'- -cGGCCUCuccGCgggCCUCCAcacguggCCUCCCa -3'
miRNA:   3'- guCCGGAGuu-UGa--GGAGGUa------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 1412 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 1476 0.71 0.613952
Target:  5'- -cGGCCUCuccGCgggCCUCCAcacguggCCUCCCa -3'
miRNA:   3'- guCCGGAGuu-UGa--GGAGGUa------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 2344 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 2389 0.7 0.674243
Target:  5'- gCGGGCUUCcagaGGGCUCUguuggUCCccggCCCCCCg -3'
miRNA:   3'- -GUCCGGAG----UUUGAGG-----AGGua--GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 2408 0.71 0.613952
Target:  5'- -cGGCCUCuccGCgggCCUCCAcacguggCCUCCCa -3'
miRNA:   3'- guCCGGAGuu-UGa--GGAGGUa------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 3011 0.66 0.890376
Target:  5'- gGGGCCUUuccaucccugGAGCaaccucaccgcaCCUCCGUgCCCCUa -3'
miRNA:   3'- gUCCGGAG----------UUUGa-----------GGAGGUAgGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 3276 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 3340 0.71 0.613952
Target:  5'- -cGGCCUCuccGCgggCCUCCAcacguggCCUCCCa -3'
miRNA:   3'- guCCGGAGuu-UGa--GGAGGUa------GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 4018 0.69 0.742921
Target:  5'- ----aCUCAcGCUCCUCCucgCCCUCCg -3'
miRNA:   3'- guccgGAGUuUGAGGAGGua-GGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 4055 0.66 0.878089
Target:  5'- cCGGGCU------UCCUaagaaCAUCCCCCCa -3'
miRNA:   3'- -GUCCGGaguuugAGGAg----GUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 4121 0.68 0.780296
Target:  5'- --uGCCcuuuUCAAACUCCccUCCugGUCCCCUCg -3'
miRNA:   3'- gucCGG----AGUUUGAGG--AGG--UAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 4230 0.66 0.863632
Target:  5'- -cGGCCUCGGcACgcggggaaUUCUCCG-CUCCCCu -3'
miRNA:   3'- guCCGGAGUU-UG--------AGGAGGUaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 5319 0.68 0.789341
Target:  5'- uGGGCCaCAGgaauCUCCUCCAaucuaacccugUCCUCUCa -3'
miRNA:   3'- gUCCGGaGUUu---GAGGAGGU-----------AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 6692 0.69 0.733321
Target:  5'- -uGGCC-CGGAUagUCCUCCAUCCaaucaaggCCCa -3'
miRNA:   3'- guCCGGaGUUUG--AGGAGGUAGGg-------GGG- -5'
28823 3' -57.4 NC_006146.1 + 7305 0.68 0.798248
Target:  5'- gAGGCCUCAAcugggcauuGC-CCaugCCAgugacUUCCCCCa -3'
miRNA:   3'- gUCCGGAGUU---------UGaGGa--GGU-----AGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 8343 0.68 0.789341
Target:  5'- gAGGCUgaUAGGgaCCaCCGUCCCCCCc -3'
miRNA:   3'- gUCCGGa-GUUUgaGGaGGUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 9596 0.68 0.761831
Target:  5'- gGGGCUUCAccacgcuaagcAGCUCCugcuucgugaccUCgGUCuCCCCCa -3'
miRNA:   3'- gUCCGGAGU-----------UUGAGG------------AGgUAG-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 12320 0.79 0.225827
Target:  5'- cCGGGCUUCAGGCccgCCUCaGUCCCCUCg -3'
miRNA:   3'- -GUCCGGAGUUUGa--GGAGgUAGGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.