miRNA display CGI


Results 21 - 40 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28823 3' -57.4 NC_006146.1 + 1412 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 481 0.66 0.885002
Target:  5'- cCGGGCCcCGcggGACcccccCCUCCG-CCCCCg -3'
miRNA:   3'- -GUCCGGaGU---UUGa----GGAGGUaGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 114159 0.66 0.885002
Target:  5'- uCAGGCCcCGGACgUCCcgcgcgaaUUCggCCCCCUg -3'
miRNA:   3'- -GUCCGGaGUUUG-AGG--------AGGuaGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 116463 0.66 0.885002
Target:  5'- gAGGUCUCGGGCguaaUCUCCGagaCCCUCu -3'
miRNA:   3'- gUCCGGAGUUUGa---GGAGGUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 81196 0.66 0.88432
Target:  5'- aAGGCC-CGGACccguguaUCCcaggCCGUUCCCCg -3'
miRNA:   3'- gUCCGGaGUUUG-------AGGa---GGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 20020 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 41866 0.66 0.878089
Target:  5'- uGGGCCcagcUCGGGCUgCgCCGUgCCCCg -3'
miRNA:   3'- gUCCGG----AGUUUGAgGaGGUAgGGGGg -5'
28823 3' -57.4 NC_006146.1 + 57248 0.66 0.878089
Target:  5'- aCGGGCC-CGuGgUCagcaaggCCAUCCCCCg -3'
miRNA:   3'- -GUCCGGaGUuUgAGga-----GGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 150928 0.66 0.878089
Target:  5'- gGGGCCUCcuga-CCUCgCAgacgCCCCCg -3'
miRNA:   3'- gUCCGGAGuuugaGGAG-GUa---GGGGGg -5'
28823 3' -57.4 NC_006146.1 + 13865 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 149686 0.66 0.878089
Target:  5'- gCAGGCCguu--UUCCUaCCAgcUCCaCCCCc -3'
miRNA:   3'- -GUCCGGaguuuGAGGA-GGU--AGG-GGGG- -5'
28823 3' -57.4 NC_006146.1 + 23098 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 168001 0.66 0.878089
Target:  5'- uGGGCgUCAGGC-CCUC--UCCUCCUc -3'
miRNA:   3'- gUCCGgAGUUUGaGGAGguAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 4055 0.66 0.878089
Target:  5'- cCGGGCU------UCCUaagaaCAUCCCCCCa -3'
miRNA:   3'- -GUCCGGaguuugAGGAg----GUAGGGGGG- -5'
28823 3' -57.4 NC_006146.1 + 26176 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 29254 0.66 0.878089
Target:  5'- -cGGCC-CGGugUgCCagCGUCCCCCg -3'
miRNA:   3'- guCCGGaGUUugA-GGagGUAGGGGGg -5'
28823 3' -57.4 NC_006146.1 + 84600 0.66 0.878089
Target:  5'- aGGGCCUCcuACUCCagCCAUgCCg-- -3'
miRNA:   3'- gUCCGGAGuuUGAGGa-GGUAgGGggg -5'
28823 3' -57.4 NC_006146.1 + 73025 0.66 0.870964
Target:  5'- aCAGG-CUCAGGC-CCUCguUCCacggCCCg -3'
miRNA:   3'- -GUCCgGAGUUUGaGGAGguAGGg---GGG- -5'
28823 3' -57.4 NC_006146.1 + 141253 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5'
28823 3' -57.4 NC_006146.1 + 144331 0.66 0.870964
Target:  5'- uGGGCCUC---UUCCUCgAggaCCCCUg -3'
miRNA:   3'- gUCCGGAGuuuGAGGAGgUag-GGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.