miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28824 3' -58.5 NC_006146.1 + 113613 0.66 0.851627
Target:  5'- uCUCCGUCGcCUgCCC-CGGCGCUggauguuguCUCGc -3'
miRNA:   3'- -GAGGCAGUaGA-GGGaGCCGUGG---------GAGU- -5'
28824 3' -58.5 NC_006146.1 + 153262 0.66 0.843863
Target:  5'- uCUUgGUCAgCUCCCUCaGCACCa--- -3'
miRNA:   3'- -GAGgCAGUaGAGGGAGcCGUGGgagu -5'
28824 3' -58.5 NC_006146.1 + 117528 0.66 0.843863
Target:  5'- uCUCaCGcC-UCUCCCUCGGgGCCUg-- -3'
miRNA:   3'- -GAG-GCaGuAGAGGGAGCCgUGGGagu -5'
28824 3' -58.5 NC_006146.1 + 60633 0.66 0.835917
Target:  5'- aUCaCGUCugcgauggCUCCCcCGaguGCACCCUCAu -3'
miRNA:   3'- gAG-GCAGua------GAGGGaGC---CGUGGGAGU- -5'
28824 3' -58.5 NC_006146.1 + 65113 0.66 0.827796
Target:  5'- -cCCGUCugggagCCCUgGGUGCCCUUg -3'
miRNA:   3'- gaGGCAGuaga--GGGAgCCGUGGGAGu -5'
28824 3' -58.5 NC_006146.1 + 74732 0.67 0.802446
Target:  5'- aCUCUaUUAUUUCCCUCG-UugCCUCAu -3'
miRNA:   3'- -GAGGcAGUAGAGGGAGCcGugGGAGU- -5'
28824 3' -58.5 NC_006146.1 + 94507 0.67 0.798963
Target:  5'- -gCCGUCGgcgcccccgguccCUCCCcCGGCgcGCCCUCu -3'
miRNA:   3'- gaGGCAGUa------------GAGGGaGCCG--UGGGAGu -5'
28824 3' -58.5 NC_006146.1 + 119896 0.67 0.76664
Target:  5'- uUCCcau-UCUCCCcccgUGGCGCCCUCu -3'
miRNA:   3'- gAGGcaguAGAGGGa---GCCGUGGGAGu -5'
28824 3' -58.5 NC_006146.1 + 89241 0.71 0.580901
Target:  5'- -cCCGcCGcUUCCC-CGGCACCCUCc -3'
miRNA:   3'- gaGGCaGUaGAGGGaGCCGUGGGAGu -5'
28824 3' -58.5 NC_006146.1 + 131002 0.71 0.571044
Target:  5'- cCUCCGUCGUUUCCCgccccgcaGGC-CgCUCAg -3'
miRNA:   3'- -GAGGCAGUAGAGGGag------CCGuGgGAGU- -5'
28824 3' -58.5 NC_006146.1 + 81507 0.73 0.466481
Target:  5'- aUCCGUCuuugugCUcCCCUCGGUGCCCa-- -3'
miRNA:   3'- gAGGCAGua----GA-GGGAGCCGUGGGagu -5'
28824 3' -58.5 NC_006146.1 + 80667 0.77 0.286019
Target:  5'- cCUCgGcC-UCUCCCUCGGCugCCUCc -3'
miRNA:   3'- -GAGgCaGuAGAGGGAGCCGugGGAGu -5'
28824 3' -58.5 NC_006146.1 + 17503 0.8 0.191481
Target:  5'- -cCCGggaaCUCCCUUGGCACCCUCAa -3'
miRNA:   3'- gaGGCaguaGAGGGAGCCGUGGGAGU- -5'
28824 3' -58.5 NC_006146.1 + 25798 0.81 0.162845
Target:  5'- cCUUCuUCAUCuacgccggggacccaUCCCUCGGCACCCUCAu -3'
miRNA:   3'- -GAGGcAGUAG---------------AGGGAGCCGUGGGAGU- -5'
28824 3' -58.5 NC_006146.1 + 79777 1.08 0.002495
Target:  5'- uCUCCGUCAUCUCCCUCGGCACCCUCAc -3'
miRNA:   3'- -GAGGCAGUAGAGGGAGCCGUGGGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.