Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28824 | 3' | -58.5 | NC_006146.1 | + | 60633 | 0.66 | 0.835917 |
Target: 5'- aUCaCGUCugcgauggCUCCCcCGaguGCACCCUCAu -3' miRNA: 3'- gAG-GCAGua------GAGGGaGC---CGUGGGAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 153262 | 0.66 | 0.843863 |
Target: 5'- uCUUgGUCAgCUCCCUCaGCACCa--- -3' miRNA: 3'- -GAGgCAGUaGAGGGAGcCGUGGgagu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 117528 | 0.66 | 0.843863 |
Target: 5'- uCUCaCGcC-UCUCCCUCGGgGCCUg-- -3' miRNA: 3'- -GAG-GCaGuAGAGGGAGCCgUGGGagu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 65113 | 0.66 | 0.827796 |
Target: 5'- -cCCGUCugggagCCCUgGGUGCCCUUg -3' miRNA: 3'- gaGGCAGuaga--GGGAgCCGUGGGAGu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 113613 | 0.66 | 0.851627 |
Target: 5'- uCUCCGUCGcCUgCCC-CGGCGCUggauguuguCUCGc -3' miRNA: 3'- -GAGGCAGUaGA-GGGaGCCGUGG---------GAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 94507 | 0.67 | 0.798963 |
Target: 5'- -gCCGUCGgcgcccccgguccCUCCCcCGGCgcGCCCUCu -3' miRNA: 3'- gaGGCAGUa------------GAGGGaGCCG--UGGGAGu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 74732 | 0.67 | 0.802446 |
Target: 5'- aCUCUaUUAUUUCCCUCG-UugCCUCAu -3' miRNA: 3'- -GAGGcAGUAGAGGGAGCcGugGGAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 119896 | 0.67 | 0.76664 |
Target: 5'- uUCCcau-UCUCCCcccgUGGCGCCCUCu -3' miRNA: 3'- gAGGcaguAGAGGGa---GCCGUGGGAGu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 131002 | 0.71 | 0.571044 |
Target: 5'- cCUCCGUCGUUUCCCgccccgcaGGC-CgCUCAg -3' miRNA: 3'- -GAGGCAGUAGAGGGag------CCGuGgGAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 89241 | 0.71 | 0.580901 |
Target: 5'- -cCCGcCGcUUCCC-CGGCACCCUCc -3' miRNA: 3'- gaGGCaGUaGAGGGaGCCGUGGGAGu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 81507 | 0.73 | 0.466481 |
Target: 5'- aUCCGUCuuugugCUcCCCUCGGUGCCCa-- -3' miRNA: 3'- gAGGCAGua----GA-GGGAGCCGUGGGagu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 80667 | 0.77 | 0.286019 |
Target: 5'- cCUCgGcC-UCUCCCUCGGCugCCUCc -3' miRNA: 3'- -GAGgCaGuAGAGGGAGCCGugGGAGu -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 17503 | 0.8 | 0.191481 |
Target: 5'- -cCCGggaaCUCCCUUGGCACCCUCAa -3' miRNA: 3'- gaGGCaguaGAGGGAGCCGUGGGAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 25798 | 0.81 | 0.162845 |
Target: 5'- cCUUCuUCAUCuacgccggggacccaUCCCUCGGCACCCUCAu -3' miRNA: 3'- -GAGGcAGUAG---------------AGGGAGCCGUGGGAGU- -5' |
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28824 | 3' | -58.5 | NC_006146.1 | + | 79777 | 1.08 | 0.002495 |
Target: 5'- uCUCCGUCAUCUCCCUCGGCACCCUCAc -3' miRNA: 3'- -GAGGCAGUAGAGGGAGCCGUGGGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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