miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28824 5' -58.4 NC_006146.1 + 127775 0.66 0.827617
Target:  5'- aUUGCC-CUGCUGCAGCUcuugaaauuuaGGAagcAGGg- -3'
miRNA:   3'- cGACGGuGACGGCGUCGA-----------CCU---UCCac -5'
28824 5' -58.4 NC_006146.1 + 101854 0.66 0.827617
Target:  5'- gGCUGCCGCaccacgggUGgCGgGGCgaGGAcGGUGg -3'
miRNA:   3'- -CGACGGUG--------ACgGCgUCGa-CCUuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 50983 0.66 0.827617
Target:  5'- cGCUGCCaacACUGaCCGCaagagGGCgccacGGggGGa- -3'
miRNA:   3'- -CGACGG---UGAC-GGCG-----UCGa----CCuuCCac -5'
28824 5' -58.4 NC_006146.1 + 70656 0.66 0.827617
Target:  5'- --aGCCGCUcacaccCCGcCAGC-GGGAGGUGa -3'
miRNA:   3'- cgaCGGUGAc-----GGC-GUCGaCCUUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 51166 0.66 0.819187
Target:  5'- gGC-GCCGCUGUgGguG-UGGAAGGg- -3'
miRNA:   3'- -CGaCGGUGACGgCguCgACCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 68056 0.66 0.819187
Target:  5'- gGCUGCC-CUgGCUGCcaaCaGGggGGUGg -3'
miRNA:   3'- -CGACGGuGA-CGGCGuc-GaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 22083 0.66 0.81059
Target:  5'- aGCUGCCucagACaGCCGCGGC----GGGUGu -3'
miRNA:   3'- -CGACGG----UGaCGGCGUCGaccuUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 157531 0.66 0.801834
Target:  5'- cGCaGaCCACggugGUCGCGGUgagGGAggAGGUGg -3'
miRNA:   3'- -CGaC-GGUGa---CGGCGUCGa--CCU--UCCAC- -5'
28824 5' -58.4 NC_006146.1 + 5481 0.66 0.801834
Target:  5'- cGCUGUC-CUGCUGCAcCUGGccuGGUu -3'
miRNA:   3'- -CGACGGuGACGGCGUcGACCuu-CCAc -5'
28824 5' -58.4 NC_006146.1 + 69645 0.66 0.792928
Target:  5'- gGCgGCUAauggGcCCGCgguccuccuccAGCUGGggGGUGg -3'
miRNA:   3'- -CGaCGGUga--C-GGCG-----------UCGACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 71822 0.66 0.78388
Target:  5'- gGUUGCCACUgauguagaGCCGgAGaccaCUGuGggGGUGa -3'
miRNA:   3'- -CGACGGUGA--------CGGCgUC----GAC-CuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 130480 0.67 0.772847
Target:  5'- --gGCCGCUGCCGCcccggguGGCUacuuugcccccgcGGGAGGc- -3'
miRNA:   3'- cgaCGGUGACGGCG-------UCGA-------------CCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 129449 0.67 0.755969
Target:  5'- cGCUGCCACcGCCGCAauggugcaaGCUaGcGAGGa- -3'
miRNA:   3'- -CGACGGUGaCGGCGU---------CGA-CcUUCCac -5'
28824 5' -58.4 NC_006146.1 + 53157 0.67 0.755969
Target:  5'- gGCgGCgACUGCgGCGGUggccGGAAGGc- -3'
miRNA:   3'- -CGaCGgUGACGgCGUCGa---CCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 126590 0.67 0.753121
Target:  5'- gGCUGCCACgGCCcCAGCccccacuaccgguuUGGc-GGUGg -3'
miRNA:   3'- -CGACGGUGaCGGcGUCG--------------ACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 154654 0.68 0.717298
Target:  5'- cGCUGCCGCcgGCUGCaccgugguGGCgggGGGcgcugcugcuGGGUGg -3'
miRNA:   3'- -CGACGGUGa-CGGCG--------UCGa--CCU----------UCCAC- -5'
28824 5' -58.4 NC_006146.1 + 84775 0.68 0.717298
Target:  5'- ---aCCACUGCCcaguaggaGCGGCUGaAAGGUGa -3'
miRNA:   3'- cgacGGUGACGG--------CGUCGACcUUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 57201 0.68 0.717298
Target:  5'- gGCUGCCGCcGCCGUccccgGGCcGGAGGc-- -3'
miRNA:   3'- -CGACGGUGaCGGCG-----UCGaCCUUCcac -5'
28824 5' -58.4 NC_006146.1 + 164306 0.68 0.697499
Target:  5'- cGCcgggGCCACUGCCGUuGCUGuugucGGGGUu -3'
miRNA:   3'- -CGa---CGGUGACGGCGuCGACc----UUCCAc -5'
28824 5' -58.4 NC_006146.1 + 42746 0.68 0.687514
Target:  5'- cGCUGCaucgcCUGCgGCAGCaGGGccgacAGGUGc -3'
miRNA:   3'- -CGACGgu---GACGgCGUCGaCCU-----UCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.