Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28824 | 5' | -58.4 | NC_006146.1 | + | 127775 | 0.66 | 0.827617 |
Target: 5'- aUUGCC-CUGCUGCAGCUcuugaaauuuaGGAagcAGGg- -3' miRNA: 3'- cGACGGuGACGGCGUCGA-----------CCU---UCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 71822 | 0.66 | 0.78388 |
Target: 5'- gGUUGCCACUgauguagaGCCGgAGaccaCUGuGggGGUGa -3' miRNA: 3'- -CGACGGUGA--------CGGCgUC----GAC-CuuCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 69645 | 0.66 | 0.792928 |
Target: 5'- gGCgGCUAauggGcCCGCgguccuccuccAGCUGGggGGUGg -3' miRNA: 3'- -CGaCGGUga--C-GGCG-----------UCGACCuuCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 70656 | 0.66 | 0.827617 |
Target: 5'- --aGCCGCUcacaccCCGcCAGC-GGGAGGUGa -3' miRNA: 3'- cgaCGGUGAc-----GGC-GUCGaCCUUCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 157531 | 0.66 | 0.801834 |
Target: 5'- cGCaGaCCACggugGUCGCGGUgagGGAggAGGUGg -3' miRNA: 3'- -CGaC-GGUGa---CGGCGUCGa--CCU--UCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 5481 | 0.66 | 0.801834 |
Target: 5'- cGCUGUC-CUGCUGCAcCUGGccuGGUu -3' miRNA: 3'- -CGACGGuGACGGCGUcGACCuu-CCAc -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 22083 | 0.66 | 0.81059 |
Target: 5'- aGCUGCCucagACaGCCGCGGC----GGGUGu -3' miRNA: 3'- -CGACGG----UGaCGGCGUCGaccuUCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 68056 | 0.66 | 0.819187 |
Target: 5'- gGCUGCC-CUgGCUGCcaaCaGGggGGUGg -3' miRNA: 3'- -CGACGGuGA-CGGCGuc-GaCCuuCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 101854 | 0.66 | 0.827617 |
Target: 5'- gGCUGCCGCaccacgggUGgCGgGGCgaGGAcGGUGg -3' miRNA: 3'- -CGACGGUG--------ACgGCgUCGa-CCUuCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 51166 | 0.66 | 0.819187 |
Target: 5'- gGC-GCCGCUGUgGguG-UGGAAGGg- -3' miRNA: 3'- -CGaCGGUGACGgCguCgACCUUCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 50983 | 0.66 | 0.827617 |
Target: 5'- cGCUGCCaacACUGaCCGCaagagGGCgccacGGggGGa- -3' miRNA: 3'- -CGACGG---UGAC-GGCG-----UCGa----CCuuCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 53157 | 0.67 | 0.755969 |
Target: 5'- gGCgGCgACUGCgGCGGUggccGGAAGGc- -3' miRNA: 3'- -CGaCGgUGACGgCGUCGa---CCUUCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 129449 | 0.67 | 0.755969 |
Target: 5'- cGCUGCCACcGCCGCAauggugcaaGCUaGcGAGGa- -3' miRNA: 3'- -CGACGGUGaCGGCGU---------CGA-CcUUCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 130480 | 0.67 | 0.772847 |
Target: 5'- --gGCCGCUGCCGCcccggguGGCUacuuugcccccgcGGGAGGc- -3' miRNA: 3'- cgaCGGUGACGGCG-------UCGA-------------CCUUCCac -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 126590 | 0.67 | 0.753121 |
Target: 5'- gGCUGCCACgGCCcCAGCccccacuaccgguuUGGc-GGUGg -3' miRNA: 3'- -CGACGGUGaCGGcGUCG--------------ACCuuCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 84775 | 0.68 | 0.717298 |
Target: 5'- ---aCCACUGCCcaguaggaGCGGCUGaAAGGUGa -3' miRNA: 3'- cgacGGUGACGG--------CGUCGACcUUCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 154654 | 0.68 | 0.717298 |
Target: 5'- cGCUGCCGCcgGCUGCaccgugguGGCgggGGGcgcugcugcuGGGUGg -3' miRNA: 3'- -CGACGGUGa-CGGCG--------UCGa--CCU----------UCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 164306 | 0.68 | 0.697499 |
Target: 5'- cGCcgggGCCACUGCCGUuGCUGuugucGGGGUu -3' miRNA: 3'- -CGa---CGGUGACGGCGuCGACc----UUCCAc -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 42746 | 0.68 | 0.687514 |
Target: 5'- cGCUGCaucgcCUGCgGCAGCaGGGccgacAGGUGc -3' miRNA: 3'- -CGACGgu---GACGgCGUCGaCCU-----UCCAC- -5' |
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28824 | 5' | -58.4 | NC_006146.1 | + | 128160 | 0.68 | 0.677485 |
Target: 5'- uGCUGCCGCagGCgaUGCAGCgacgccGGGAGGc- -3' miRNA: 3'- -CGACGGUGa-CG--GCGUCGa-----CCUUCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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