miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28824 5' -58.4 NC_006146.1 + 79812 1.1 0.001484
Target:  5'- cGCUGCCACUGCCGCAGCUGGAAGGUGu -3'
miRNA:   3'- -CGACGGUGACGGCGUCGACCUUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 91097 0.76 0.292718
Target:  5'- aGCUGCgGCaGUgGCAGCggaGGGAGGUGa -3'
miRNA:   3'- -CGACGgUGaCGgCGUCGa--CCUUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 33377 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 33255 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 33131 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 23108 0.74 0.358356
Target:  5'- uGCUGUCACUGCCGCuGCucuuccUGGGAGa-- -3'
miRNA:   3'- -CGACGGUGACGGCGuCG------ACCUUCcac -5'
28824 5' -58.4 NC_006146.1 + 94949 0.72 0.479216
Target:  5'- --gGCCGCUGCgGUAGa-GGggGGUGu -3'
miRNA:   3'- cgaCGGUGACGgCGUCgaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 115722 0.71 0.498101
Target:  5'- --cGCCGCgGCCGCAGCcUGGGAcgcGGUc -3'
miRNA:   3'- cgaCGGUGaCGGCGUCG-ACCUU---CCAc -5'
28824 5' -58.4 NC_006146.1 + 90163 0.71 0.536812
Target:  5'- gGCaGCCGagguagagGCCGCGGCagGGGAGGUa -3'
miRNA:   3'- -CGaCGGUga------CGGCGUCGa-CCUUCCAc -5'
28824 5' -58.4 NC_006146.1 + 115142 0.7 0.596621
Target:  5'- cGCUGCCcCUGgcCCGCcGCcGGgcGGUGg -3'
miRNA:   3'- -CGACGGuGAC--GGCGuCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 13988 0.7 0.597629
Target:  5'- cGCcGCCACccaggccucggccggGCUGguGCUGGAAGGc- -3'
miRNA:   3'- -CGaCGGUGa--------------CGGCguCGACCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 92242 0.7 0.606717
Target:  5'- gGCccgGCCugUgGCUGCuGCUGGggGGc- -3'
miRNA:   3'- -CGa--CGGugA-CGGCGuCGACCuuCCac -5'
28824 5' -58.4 NC_006146.1 + 39983 0.69 0.626956
Target:  5'- gGCUGagGCUGCUGCGGCccguagUGGccGGUGu -3'
miRNA:   3'- -CGACggUGACGGCGUCG------ACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 44821 0.69 0.637085
Target:  5'- --gGCC-CcGCUGCGGCUGGugacgGAGGUGg -3'
miRNA:   3'- cgaCGGuGaCGGCGUCGACC-----UUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 42522 0.69 0.656314
Target:  5'- uGCgGCUACUGCCugaacuuugggaaGCAGaC-GGggGGUGg -3'
miRNA:   3'- -CGaCGGUGACGG-------------CGUC-GaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135398 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135305 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135212 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135584 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135491 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.