miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28824 5' -58.4 NC_006146.1 + 42746 0.68 0.687514
Target:  5'- cGCUGCaucgcCUGCgGCAGCaGGGccgacAGGUGc -3'
miRNA:   3'- -CGACGgu---GACGgCGUCGaCCU-----UCCAC- -5'
28824 5' -58.4 NC_006146.1 + 128160 0.68 0.677485
Target:  5'- uGCUGCCGCagGCgaUGCAGCgacgccGGGAGGc- -3'
miRNA:   3'- -CGACGGUGa-CG--GCGUCGa-----CCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 153500 0.68 0.677485
Target:  5'- --gGCCGCUGCCGUgcuuCUGGAGGcuGUGg -3'
miRNA:   3'- cgaCGGUGACGGCGuc--GACCUUC--CAC- -5'
28824 5' -58.4 NC_006146.1 + 135677 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136327 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136420 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136513 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136606 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135584 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135491 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136699 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136791 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136977 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 137070 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 136884 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 137256 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 137442 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135212 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135305 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 135398 0.69 0.657325
Target:  5'- cGCUGCC-CcGCUcCGGC-GGggGGUGg -3'
miRNA:   3'- -CGACGGuGaCGGcGUCGaCCuuCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.