miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28824 5' -58.4 NC_006146.1 + 5481 0.66 0.801834
Target:  5'- cGCUGUC-CUGCUGCAcCUGGccuGGUu -3'
miRNA:   3'- -CGACGGuGACGGCGUcGACCuu-CCAc -5'
28824 5' -58.4 NC_006146.1 + 13988 0.7 0.597629
Target:  5'- cGCcGCCACccaggccucggccggGCUGguGCUGGAAGGc- -3'
miRNA:   3'- -CGaCGGUGa--------------CGGCguCGACCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 22083 0.66 0.81059
Target:  5'- aGCUGCCucagACaGCCGCGGC----GGGUGu -3'
miRNA:   3'- -CGACGG----UGaCGGCGUCGaccuUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 23108 0.74 0.358356
Target:  5'- uGCUGUCACUGCCGCuGCucuuccUGGGAGa-- -3'
miRNA:   3'- -CGACGGUGACGGCGuCG------ACCUUCcac -5'
28824 5' -58.4 NC_006146.1 + 33131 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 33255 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 33377 0.74 0.358356
Target:  5'- cGCcggGCCGCUGCCccgcucCGGgUGGggGGUGg -3'
miRNA:   3'- -CGa--CGGUGACGGc-----GUCgACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 39983 0.69 0.626956
Target:  5'- gGCUGagGCUGCUGCGGCccguagUGGccGGUGu -3'
miRNA:   3'- -CGACggUGACGGCGUCG------ACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 42522 0.69 0.656314
Target:  5'- uGCgGCUACUGCCugaacuuugggaaGCAGaC-GGggGGUGg -3'
miRNA:   3'- -CGaCGGUGACGG-------------CGUC-GaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 42746 0.68 0.687514
Target:  5'- cGCUGCaucgcCUGCgGCAGCaGGGccgacAGGUGc -3'
miRNA:   3'- -CGACGgu---GACGgCGUCGaCCU-----UCCAC- -5'
28824 5' -58.4 NC_006146.1 + 44821 0.69 0.637085
Target:  5'- --gGCC-CcGCUGCGGCUGGugacgGAGGUGg -3'
miRNA:   3'- cgaCGGuGaCGGCGUCGACC-----UUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 50983 0.66 0.827617
Target:  5'- cGCUGCCaacACUGaCCGCaagagGGCgccacGGggGGa- -3'
miRNA:   3'- -CGACGG---UGAC-GGCG-----UCGa----CCuuCCac -5'
28824 5' -58.4 NC_006146.1 + 51166 0.66 0.819187
Target:  5'- gGC-GCCGCUGUgGguG-UGGAAGGg- -3'
miRNA:   3'- -CGaCGGUGACGgCguCgACCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 53157 0.67 0.755969
Target:  5'- gGCgGCgACUGCgGCGGUggccGGAAGGc- -3'
miRNA:   3'- -CGaCGgUGACGgCGUCGa---CCUUCCac -5'
28824 5' -58.4 NC_006146.1 + 57201 0.68 0.717298
Target:  5'- gGCUGCCGCcGCCGUccccgGGCcGGAGGc-- -3'
miRNA:   3'- -CGACGGUGaCGGCG-----UCGaCCUUCcac -5'
28824 5' -58.4 NC_006146.1 + 68056 0.66 0.819187
Target:  5'- gGCUGCC-CUgGCUGCcaaCaGGggGGUGg -3'
miRNA:   3'- -CGACGGuGA-CGGCGuc-GaCCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 69645 0.66 0.792928
Target:  5'- gGCgGCUAauggGcCCGCgguccuccuccAGCUGGggGGUGg -3'
miRNA:   3'- -CGaCGGUga--C-GGCG-----------UCGACCuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 70656 0.66 0.827617
Target:  5'- --aGCCGCUcacaccCCGcCAGC-GGGAGGUGa -3'
miRNA:   3'- cgaCGGUGAc-----GGC-GUCGaCCUUCCAC- -5'
28824 5' -58.4 NC_006146.1 + 71822 0.66 0.78388
Target:  5'- gGUUGCCACUgauguagaGCCGgAGaccaCUGuGggGGUGa -3'
miRNA:   3'- -CGACGGUGA--------CGGCgUC----GAC-CuuCCAC- -5'
28824 5' -58.4 NC_006146.1 + 79812 1.1 0.001484
Target:  5'- cGCUGCCACUGCCGCAGCUGGAAGGUGu -3'
miRNA:   3'- -CGACGGUGACGGCGUCGACCUUCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.