miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28825 3' -55.2 NC_006146.1 + 36736 0.66 0.953386
Target:  5'- cGG-CGU--GCAGGc-CCCCCUCUUAGg -3'
miRNA:   3'- -CCaGUAccUGUCCuuGGGGGAGAGUC- -5'
28825 3' -55.2 NC_006146.1 + 114348 0.66 0.953386
Target:  5'- cGGagGUGGACGGGGGCCuggCCCgcgugacgCgUCAGc -3'
miRNA:   3'- -CCagUACCUGUCCUUGG---GGGa-------G-AGUC- -5'
28825 3' -55.2 NC_006146.1 + 128365 0.66 0.945033
Target:  5'- -----cGGACAGG--CCCCCUCcCAGu -3'
miRNA:   3'- ccaguaCCUGUCCuuGGGGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 13120 0.66 0.94051
Target:  5'- -uUUGUGGACGGGGGCUCCCgggCcCAc -3'
miRNA:   3'- ccAGUACCUGUCCUUGGGGGa--GaGUc -5'
28825 3' -55.2 NC_006146.1 + 38537 0.66 0.935755
Target:  5'- aGGcCGUGGagacGCAGG-ACCCCgUC-CAGu -3'
miRNA:   3'- -CCaGUACC----UGUCCuUGGGGgAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 159880 0.67 0.925537
Target:  5'- aGGUCGc--GCGGGAGaCCCCCUCcgUCAa -3'
miRNA:   3'- -CCAGUaccUGUCCUU-GGGGGAG--AGUc -5'
28825 3' -55.2 NC_006146.1 + 75871 0.67 0.925537
Target:  5'- cGUgGUGGACGaggccGGGACCCUCUC-CGu -3'
miRNA:   3'- cCAgUACCUGU-----CCUUGGGGGAGaGUc -5'
28825 3' -55.2 NC_006146.1 + 168496 0.67 0.925001
Target:  5'- cGGUCGgggGGcCGGGGACCaacagagCCCUCUgGa -3'
miRNA:   3'- -CCAGUa--CCuGUCCUUGG-------GGGAGAgUc -5'
28825 3' -55.2 NC_006146.1 + 6224 0.67 0.920075
Target:  5'- aGGUgGUGGAgaCAGGGguccauucggGCCCUauguUUCUCAGg -3'
miRNA:   3'- -CCAgUACCU--GUCCU----------UGGGG----GAGAGUC- -5'
28825 3' -55.2 NC_006146.1 + 151892 0.67 0.920075
Target:  5'- --aCGUGGAacucgaGGGGGCCCCCaCUgGGg -3'
miRNA:   3'- ccaGUACCUg-----UCCUUGGGGGaGAgUC- -5'
28825 3' -55.2 NC_006146.1 + 28970 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 22815 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 25893 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 19737 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 16659 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 13581 0.67 0.920075
Target:  5'- -cUCGcGGACAGGGGCCucccagggCCCUC-CAGu -3'
miRNA:   3'- ccAGUaCCUGUCCUUGG--------GGGAGaGUC- -5'
28825 3' -55.2 NC_006146.1 + 50992 0.67 0.914377
Target:  5'- --aCAUGGAUAGGAAaggCUCCUCuacgUCAGa -3'
miRNA:   3'- ccaGUACCUGUCCUUg--GGGGAG----AGUC- -5'
28825 3' -55.2 NC_006146.1 + 128007 0.67 0.908445
Target:  5'- gGGUCuuUGGGgAGGAcguGCCCCCcUUCGc -3'
miRNA:   3'- -CCAGu-ACCUgUCCU---UGGGGGaGAGUc -5'
28825 3' -55.2 NC_006146.1 + 47880 0.67 0.901651
Target:  5'- aGGcCGUGGACGGGuuccuugGGCgCUCUCUCuGg -3'
miRNA:   3'- -CCaGUACCUGUCC-------UUGgGGGAGAGuC- -5'
28825 3' -55.2 NC_006146.1 + 145045 0.68 0.865853
Target:  5'- uGGcCGggcGGGCGGGGACggggcugcucggguCCCUUCUCGGg -3'
miRNA:   3'- -CCaGUa--CCUGUCCUUG--------------GGGGAGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.