miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28825 5' -63.7 NC_006146.1 + 17686 0.66 0.643658
Target:  5'- uCCGGCaucuacGGGCGG-CCCGUG-GCGGc -3'
miRNA:   3'- uGGCCGcu----CCCGUUgGGGCGCuCGCC- -5'
28825 5' -63.7 NC_006146.1 + 15141 0.66 0.643658
Target:  5'- -gCGGCGGGGucuaCAGCUCCuCGGGCGa -3'
miRNA:   3'- ugGCCGCUCCc---GUUGGGGcGCUCGCc -5'
28825 5' -63.7 NC_006146.1 + 160788 0.66 0.643658
Target:  5'- --gGGCGAGGGUgaGACCCaCGCcucGAcCGGg -3'
miRNA:   3'- uggCCGCUCCCG--UUGGG-GCG---CUcGCC- -5'
28825 5' -63.7 NC_006146.1 + 54015 0.66 0.643658
Target:  5'- gGCCGGCaccaGGuGGCGcCUCCGgaGGGCGGc -3'
miRNA:   3'- -UGGCCGc---UC-CCGUuGGGGCg-CUCGCC- -5'
28825 5' -63.7 NC_006146.1 + 156331 0.66 0.643658
Target:  5'- uCCGGgauGGGGCucacGCCCCGaaAGCGGc -3'
miRNA:   3'- uGGCCgc-UCCCGu---UGGGGCgcUCGCC- -5'
28825 5' -63.7 NC_006146.1 + 118342 0.66 0.643658
Target:  5'- gGCCGGCGGGcGCGugaACaucuaCCGCucGGCGGa -3'
miRNA:   3'- -UGGCCGCUCcCGU---UGg----GGCGc-UCGCC- -5'
28825 5' -63.7 NC_006146.1 + 170120 0.66 0.642702
Target:  5'- gGCCGGCG-GGGCGucccgucgucacGCUCggcugcaCGCGcGGCGGn -3'
miRNA:   3'- -UGGCCGCuCCCGU------------UGGG-------GCGC-UCGCC- -5'
28825 5' -63.7 NC_006146.1 + 169189 0.66 0.642702
Target:  5'- gGCCGGCG-GGGCGucccgucgucacGCUCggcugcaCGCGcGGCGGn -3'
miRNA:   3'- -UGGCCGCuCCCGU------------UGGG-------GCGC-UCGCC- -5'
28825 5' -63.7 NC_006146.1 + 168257 0.66 0.642702
Target:  5'- gGCCGGCG-GGGCGucccgucgucacGCUCggcugcaCGCGcGGCGGn -3'
miRNA:   3'- -UGGCCGCuCCCGU------------UGGG-------GCGC-UCGCC- -5'
28825 5' -63.7 NC_006146.1 + 167325 0.66 0.642702
Target:  5'- gGCCGGCG-GGGCGucccgucgucacGCUCggcugcaCGCGcGGCGGn -3'
miRNA:   3'- -UGGCCGCuCCCGU------------UGGG-------GCGC-UCGCC- -5'
28825 5' -63.7 NC_006146.1 + 15072 0.66 0.637919
Target:  5'- cACUGGCGGGGGCuccgcugacucaccuGuuugacucggugGCCCCcagggccacCGAGCGGc -3'
miRNA:   3'- -UGGCCGCUCCCG---------------U------------UGGGGc--------GCUCGCC- -5'
28825 5' -63.7 NC_006146.1 + 49625 0.66 0.634092
Target:  5'- uCCa--GAGGGCAggugcacgGCCCCGUGAacgaaGCGGg -3'
miRNA:   3'- uGGccgCUCCCGU--------UGGGGCGCU-----CGCC- -5'
28825 5' -63.7 NC_006146.1 + 120020 0.66 0.633136
Target:  5'- cACCcGCGGccaguccGGGCAcagACCCCGC--GCGGa -3'
miRNA:   3'- -UGGcCGCU-------CCCGU---UGGGGCGcuCGCC- -5'
28825 5' -63.7 NC_006146.1 + 158824 0.66 0.624525
Target:  5'- cACaCGGCcGGGGCccGGCCCUcgcaaaGCGAGCa- -3'
miRNA:   3'- -UG-GCCGcUCCCG--UUGGGG------CGCUCGcc -5'
28825 5' -63.7 NC_006146.1 + 57781 0.66 0.624525
Target:  5'- cACCGGCGGaagacauGGCAucCCCCGgGgAGCGc -3'
miRNA:   3'- -UGGCCGCUc------CCGUu-GGGGCgC-UCGCc -5'
28825 5' -63.7 NC_006146.1 + 157548 0.66 0.624525
Target:  5'- -gCGGUGAGGGaggagguGGCCuCCGCGuaggccGCGGc -3'
miRNA:   3'- ugGCCGCUCCCg------UUGG-GGCGCu-----CGCC- -5'
28825 5' -63.7 NC_006146.1 + 89107 0.66 0.624525
Target:  5'- uACCGGCacugccccaGGuGGCAcCCCCGgagacCGGGCGGc -3'
miRNA:   3'- -UGGCCGc--------UC-CCGUuGGGGC-----GCUCGCC- -5'
28825 5' -63.7 NC_006146.1 + 52099 0.66 0.624525
Target:  5'- gGCCGGCGAGGcCAucuguuCCCCGUc-GCuGGa -3'
miRNA:   3'- -UGGCCGCUCCcGUu-----GGGGCGcuCG-CC- -5'
28825 5' -63.7 NC_006146.1 + 162383 0.66 0.624525
Target:  5'- uGCaGGaCGGGGGCuuuGCCCUGgGAGUa- -3'
miRNA:   3'- -UGgCC-GCUCCCGu--UGGGGCgCUCGcc -5'
28825 5' -63.7 NC_006146.1 + 46795 0.66 0.614963
Target:  5'- gGCCGGCgcGAGGGCAaagGCCuCUGgGuucuccagcacGGUGGg -3'
miRNA:   3'- -UGGCCG--CUCCCGU---UGG-GGCgC-----------UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.