miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 3' -55.5 NC_006146.1 + 91676 0.66 0.939093
Target:  5'- uCCUUggGCGGg--CUGAGACUcuacgGUGGCa -3'
miRNA:   3'- uGGAGa-CGCCguaGGCUCUGA-----UACCG- -5'
28826 3' -55.5 NC_006146.1 + 58518 0.66 0.939093
Target:  5'- aGCCcCUGCGGCGUCCacaACUucuaAUGGa -3'
miRNA:   3'- -UGGaGACGCCGUAGGcucUGA----UACCg -5'
28826 3' -55.5 NC_006146.1 + 155534 0.66 0.934237
Target:  5'- cGCUUCaGC-GCGUCCGAGAg---GGCg -3'
miRNA:   3'- -UGGAGaCGcCGUAGGCUCUgauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 119494 0.66 0.923812
Target:  5'- aGCCacCUGCGGUcgcaauuuugCCGGGAUgcUGGCu -3'
miRNA:   3'- -UGGa-GACGCCGua--------GGCUCUGauACCG- -5'
28826 3' -55.5 NC_006146.1 + 70146 0.66 0.918242
Target:  5'- cGCCUUcGCcuGGCuccuggCCGGGGCgcugGUGGCc -3'
miRNA:   3'- -UGGAGaCG--CCGua----GGCUCUGa---UACCG- -5'
28826 3' -55.5 NC_006146.1 + 102589 0.66 0.918242
Target:  5'- uCCUCUcGCGGC--CCGAGGag--GGCu -3'
miRNA:   3'- uGGAGA-CGCCGuaGGCUCUgauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 43475 0.67 0.912434
Target:  5'- aGCCUCcucgGCGGCcgUUGAcaccGGCUccGGCg -3'
miRNA:   3'- -UGGAGa---CGCCGuaGGCU----CUGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 5393 0.67 0.91184
Target:  5'- uGCUgc-GUGGCAUCCGGGGCUGcguccugcccugcUGGa -3'
miRNA:   3'- -UGGagaCGCCGUAGGCUCUGAU-------------ACCg -5'
28826 3' -55.5 NC_006146.1 + 118271 0.67 0.900111
Target:  5'- cGCCagaGCGGCAUCCucagGGGGCacgagAUGGCc -3'
miRNA:   3'- -UGGagaCGCCGUAGG----CUCUGa----UACCG- -5'
28826 3' -55.5 NC_006146.1 + 117570 0.67 0.900111
Target:  5'- cGCC-CcGCGGCcgCCGGGccucCUcgGGCu -3'
miRNA:   3'- -UGGaGaCGCCGuaGGCUCu---GAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 40253 0.67 0.900111
Target:  5'- gACCUCggGUGGgAUCCguaguaggGAGGCgcgGGCg -3'
miRNA:   3'- -UGGAGa-CGCCgUAGG--------CUCUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 126442 0.67 0.900111
Target:  5'- cGCUUcCUGCGuGgGauUCCacggGAGGCUAUGGCa -3'
miRNA:   3'- -UGGA-GACGC-CgU--AGG----CUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 142052 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 145130 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 151286 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 154364 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 157442 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 148208 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 85602 0.67 0.886862
Target:  5'- cGCCUCggaaGCuGGCA-CCGGGGCaaagGGCc -3'
miRNA:   3'- -UGGAGa---CG-CCGUaGGCUCUGaua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 62996 0.67 0.879899
Target:  5'- gGCC-CUG-GGC-UCCGGGAgUcUGGCg -3'
miRNA:   3'- -UGGaGACgCCGuAGGCUCUgAuACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.