Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 77425 | 1.12 | 0.002211 |
Target: 5'- aACCUCUGCGGCAUCCGAGACUAUGGCa -3' miRNA: 3'- -UGGAGACGCCGUAGGCUCUGAUACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 46717 | 0.75 | 0.464189 |
Target: 5'- gGCCgcgGCGGC-UCCGAGGCg--GGCg -3' miRNA: 3'- -UGGagaCGCCGuAGGCUCUGauaCCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 33089 | 0.75 | 0.482961 |
Target: 5'- gGCC-CUGCGGC-UCUGGGGCagccggGUGGCc -3' miRNA: 3'- -UGGaGACGCCGuAGGCUCUGa-----UACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 28413 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 25335 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 22257 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 19179 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 16101 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 13023 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 10859 | 0.72 | 0.62219 |
Target: 5'- uCCUCUGCGGCAUCaccgugGAGcCg--GGCu -3' miRNA: 3'- uGGAGACGCCGUAGg-----CUCuGauaCCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 115280 | 0.72 | 0.652849 |
Target: 5'- -aCUCguagGCGGCAUCCG-GGCgggaGUGGUc -3' miRNA: 3'- ugGAGa---CGCCGUAGGCuCUGa---UACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 93153 | 0.72 | 0.652849 |
Target: 5'- gGCCUCUGCGGCAcuaUCCGGGuCa----- -3' miRNA: 3'- -UGGAGACGCCGU---AGGCUCuGauaccg -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 108541 | 0.72 | 0.663046 |
Target: 5'- gGCCUCUccggcGCGGCGUUgGAGugGCUGggcuUGGCu -3' miRNA: 3'- -UGGAGA-----CGCCGUAGgCUC--UGAU----ACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 53794 | 0.71 | 0.692447 |
Target: 5'- gGCCUCggcccgcGCGGCGUCCauagcggGGGGCUGgaagagucgGGCg -3' miRNA: 3'- -UGGAGa------CGCCGUAGG-------CUCUGAUa--------CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 95100 | 0.71 | 0.703501 |
Target: 5'- gGCCUCgaagGCGGCGcCCGAGACg----- -3' miRNA: 3'- -UGGAGa---CGCCGUaGGCUCUGauaccg -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 53149 | 0.7 | 0.733242 |
Target: 5'- uCCUCUGUGGCGgcgaCUGcGGCgGUGGCc -3' miRNA: 3'- uGGAGACGCCGUa---GGCuCUGaUACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 65313 | 0.7 | 0.742992 |
Target: 5'- uGCCUCUuGCGGCcUCuCGAG--UAUGGUg -3' miRNA: 3'- -UGGAGA-CGCCGuAG-GCUCugAUACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 56842 | 0.7 | 0.752646 |
Target: 5'- gGCCUCUggcggcggggGCGGCAgcuuuggCUGGGGCUGgcGGCc -3' miRNA: 3'- -UGGAGA----------CGCCGUa------GGCUCUGAUa-CCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 120522 | 0.7 | 0.771628 |
Target: 5'- aGCCgcguggaUGCGGCGg-CGGGACUGcUGGCc -3' miRNA: 3'- -UGGag-----ACGCCGUagGCUCUGAU-ACCG- -5' |
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28826 | 3' | -55.5 | NC_006146.1 | + | 5386 | 0.7 | 0.780937 |
Target: 5'- uACCUCaUGUGGCugcUCCGAGAaUAcGGUg -3' miRNA: 3'- -UGGAG-ACGCCGu--AGGCUCUgAUaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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