miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 3' -55.5 NC_006146.1 + 62996 0.67 0.879899
Target:  5'- gGCC-CUG-GGC-UCCGGGAgUcUGGCg -3'
miRNA:   3'- -UGGaGACgCCGuAGGCUCUgAuACCG- -5'
28826 3' -55.5 NC_006146.1 + 128080 0.67 0.87919
Target:  5'- gGCCUCaugcaggUGCGGgAggggCCGAGGCaggggacaAUGGCg -3'
miRNA:   3'- -UGGAG-------ACGCCgUa---GGCUCUGa-------UACCG- -5'
28826 3' -55.5 NC_006146.1 + 48197 0.68 0.872715
Target:  5'- cGCCgacuUGGCAUCCGGGgACUGgagGGCc -3'
miRNA:   3'- -UGGagacGCCGUAGGCUC-UGAUa--CCG- -5'
28826 3' -55.5 NC_006146.1 + 114611 0.68 0.872715
Target:  5'- cACCUCgagGCGGCG-CUG-GACguccUGGCc -3'
miRNA:   3'- -UGGAGa--CGCCGUaGGCuCUGau--ACCG- -5'
28826 3' -55.5 NC_006146.1 + 69054 0.68 0.872715
Target:  5'- cACCcguggUGCGGCAgcCCGAGcGCUcgGGCc -3'
miRNA:   3'- -UGGag---ACGCCGUa-GGCUC-UGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 120968 0.68 0.865317
Target:  5'- uACacg-GCGGaCGUCCGGGACcgaGUGGCc -3'
miRNA:   3'- -UGgagaCGCC-GUAGGCUCUGa--UACCG- -5'
28826 3' -55.5 NC_006146.1 + 38435 0.68 0.864566
Target:  5'- gGCCUCUGCuGGCAcacauccccugccUCCGGgguGACg--GGUg -3'
miRNA:   3'- -UGGAGACG-CCGU-------------AGGCU---CUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 41847 0.68 0.857709
Target:  5'- gGCUgUCUGCgccGGCGUCUGGGcccaGCUcgGGCu -3'
miRNA:   3'- -UGG-AGACG---CCGUAGGCUC----UGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 38284 0.69 0.82531
Target:  5'- -gCUCUGUGGCAgacaUCUuAGACUA-GGCu -3'
miRNA:   3'- ugGAGACGCCGU----AGGcUCUGAUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 131599 0.69 0.816754
Target:  5'- gACUaCUGUGGUAgUgGGGGCUGUGGUa -3'
miRNA:   3'- -UGGaGACGCCGUaGgCUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 90606 0.69 0.816754
Target:  5'- gACCUCU--GGUggCCGAGGCaGUGGUa -3'
miRNA:   3'- -UGGAGAcgCCGuaGGCUCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 44732 0.69 0.80803
Target:  5'- gGCCUgaUGCGGUggCCGcgggcGGCUGUGGUu -3'
miRNA:   3'- -UGGAg-ACGCCGuaGGCu----CUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 96859 0.69 0.799146
Target:  5'- aGCCUCUGCcGCGUcagccgCCGAGACUGcauccGCg -3'
miRNA:   3'- -UGGAGACGcCGUA------GGCUCUGAUac---CG- -5'
28826 3' -55.5 NC_006146.1 + 100160 0.69 0.790113
Target:  5'- uUCUCgGCGGCGUCCGcGAggGgGGCa -3'
miRNA:   3'- uGGAGaCGCCGUAGGCuCUgaUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 5386 0.7 0.780937
Target:  5'- uACCUCaUGUGGCugcUCCGAGAaUAcGGUg -3'
miRNA:   3'- -UGGAG-ACGCCGu--AGGCUCUgAUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 120522 0.7 0.771628
Target:  5'- aGCCgcguggaUGCGGCGg-CGGGACUGcUGGCc -3'
miRNA:   3'- -UGGag-----ACGCCGUagGCUCUGAU-ACCG- -5'
28826 3' -55.5 NC_006146.1 + 56842 0.7 0.752646
Target:  5'- gGCCUCUggcggcggggGCGGCAgcuuuggCUGGGGCUGgcGGCc -3'
miRNA:   3'- -UGGAGA----------CGCCGUa------GGCUCUGAUa-CCG- -5'
28826 3' -55.5 NC_006146.1 + 65313 0.7 0.742992
Target:  5'- uGCCUCUuGCGGCcUCuCGAG--UAUGGUg -3'
miRNA:   3'- -UGGAGA-CGCCGuAG-GCUCugAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 53149 0.7 0.733242
Target:  5'- uCCUCUGUGGCGgcgaCUGcGGCgGUGGCc -3'
miRNA:   3'- uGGAGACGCCGUa---GGCuCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 95100 0.71 0.703501
Target:  5'- gGCCUCgaagGCGGCGcCCGAGACg----- -3'
miRNA:   3'- -UGGAGa---CGCCGUaGGCUCUGauaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.