Results 1 - 20 of 54 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 5386 | 0.7 | 0.780937 |
Target: 5'- uACCUCaUGUGGCugcUCCGAGAaUAcGGUg -3' miRNA: 3'- -UGGAG-ACGCCGu--AGGCUCUgAUaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 5393 | 0.67 | 0.91184 |
Target: 5'- uGCUgc-GUGGCAUCCGGGGCUGcguccugcccugcUGGa -3' miRNA: 3'- -UGGagaCGCCGUAGGCUCUGAU-------------ACCg -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 10859 | 0.72 | 0.62219 |
Target: 5'- uCCUCUGCGGCAUCaccgugGAGcCg--GGCu -3' miRNA: 3'- uGGAGACGCCGUAGg-----CUCuGauaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 13023 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 16101 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 19179 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 22257 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 25335 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 28413 | 0.74 | 0.515678 |
Target: 5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3' miRNA: 3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 33089 | 0.75 | 0.482961 |
Target: 5'- gGCC-CUGCGGC-UCUGGGGCagccggGUGGCc -3' miRNA: 3'- -UGGaGACGCCGuAGGCUCUGa-----UACCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 38284 | 0.69 | 0.82531 |
Target: 5'- -gCUCUGUGGCAgacaUCUuAGACUA-GGCu -3' miRNA: 3'- ugGAGACGCCGU----AGGcUCUGAUaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 38435 | 0.68 | 0.864566 |
Target: 5'- gGCCUCUGCuGGCAcacauccccugccUCCGGgguGACg--GGUg -3' miRNA: 3'- -UGGAGACG-CCGU-------------AGGCU---CUGauaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 40253 | 0.67 | 0.900111 |
Target: 5'- gACCUCggGUGGgAUCCguaguaggGAGGCgcgGGCg -3' miRNA: 3'- -UGGAGa-CGCCgUAGG--------CUCUGauaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 41847 | 0.68 | 0.857709 |
Target: 5'- gGCUgUCUGCgccGGCGUCUGGGcccaGCUcgGGCu -3' miRNA: 3'- -UGG-AGACG---CCGUAGGCUC----UGAuaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 43475 | 0.67 | 0.912434 |
Target: 5'- aGCCUCcucgGCGGCcgUUGAcaccGGCUccGGCg -3' miRNA: 3'- -UGGAGa---CGCCGuaGGCU----CUGAuaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 44732 | 0.69 | 0.80803 |
Target: 5'- gGCCUgaUGCGGUggCCGcgggcGGCUGUGGUu -3' miRNA: 3'- -UGGAg-ACGCCGuaGGCu----CUGAUACCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 46717 | 0.75 | 0.464189 |
Target: 5'- gGCCgcgGCGGC-UCCGAGGCg--GGCg -3' miRNA: 3'- -UGGagaCGCCGuAGGCUCUGauaCCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 48197 | 0.68 | 0.872715 |
Target: 5'- cGCCgacuUGGCAUCCGGGgACUGgagGGCc -3' miRNA: 3'- -UGGagacGCCGUAGGCUC-UGAUa--CCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 53149 | 0.7 | 0.733242 |
Target: 5'- uCCUCUGUGGCGgcgaCUGcGGCgGUGGCc -3' miRNA: 3'- uGGAGACGCCGUa---GGCuCUGaUACCG- -5' |
|||||||
28826 | 3' | -55.5 | NC_006146.1 | + | 53727 | 0.67 | 0.879899 |
Target: 5'- uCCUCUccgggagccGCGGCugcgCCGGGGCgaagacgGGCg -3' miRNA: 3'- uGGAGA---------CGCCGua--GGCUCUGaua----CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home