miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 3' -55.5 NC_006146.1 + 46717 0.75 0.464189
Target:  5'- gGCCgcgGCGGC-UCCGAGGCg--GGCg -3'
miRNA:   3'- -UGGagaCGCCGuAGGCUCUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 131599 0.69 0.816754
Target:  5'- gACUaCUGUGGUAgUgGGGGCUGUGGUa -3'
miRNA:   3'- -UGGaGACGCCGUaGgCUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 38435 0.68 0.864566
Target:  5'- gGCCUCUGCuGGCAcacauccccugccUCCGGgguGACg--GGUg -3'
miRNA:   3'- -UGGAGACG-CCGU-------------AGGCU---CUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 155534 0.66 0.934237
Target:  5'- cGCUUCaGC-GCGUCCGAGAg---GGCg -3'
miRNA:   3'- -UGGAGaCGcCGUAGGCUCUgauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 19179 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 22257 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 28413 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 115280 0.72 0.652849
Target:  5'- -aCUCguagGCGGCAUCCG-GGCgggaGUGGUc -3'
miRNA:   3'- ugGAGa---CGCCGUAGGCuCUGa---UACCG- -5'
28826 3' -55.5 NC_006146.1 + 53149 0.7 0.733242
Target:  5'- uCCUCUGUGGCGgcgaCUGcGGCgGUGGCc -3'
miRNA:   3'- uGGAGACGCCGUa---GGCuCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 44732 0.69 0.80803
Target:  5'- gGCCUgaUGCGGUggCCGcgggcGGCUGUGGUu -3'
miRNA:   3'- -UGGAg-ACGCCGuaGGCu----CUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 56842 0.7 0.752646
Target:  5'- gGCCUCUggcggcggggGCGGCAgcuuuggCUGGGGCUGgcGGCc -3'
miRNA:   3'- -UGGAGA----------CGCCGUa------GGCUCUGAUa-CCG- -5'
28826 3' -55.5 NC_006146.1 + 95100 0.71 0.703501
Target:  5'- gGCCUCgaagGCGGCGcCCGAGACg----- -3'
miRNA:   3'- -UGGAGa---CGCCGUaGGCUCUGauaccg -5'
28826 3' -55.5 NC_006146.1 + 33089 0.75 0.482961
Target:  5'- gGCC-CUGCGGC-UCUGGGGCagccggGUGGCc -3'
miRNA:   3'- -UGGaGACGCCGuAGGCUCUGa-----UACCG- -5'
28826 3' -55.5 NC_006146.1 + 100160 0.69 0.790113
Target:  5'- uUCUCgGCGGCGUCCGcGAggGgGGCa -3'
miRNA:   3'- uGGAGaCGCCGUAGGCuCUgaUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 13023 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 53794 0.71 0.692447
Target:  5'- gGCCUCggcccgcGCGGCGUCCauagcggGGGGCUGgaagagucgGGCg -3'
miRNA:   3'- -UGGAGa------CGCCGUAGG-------CUCUGAUa--------CCG- -5'
28826 3' -55.5 NC_006146.1 + 96859 0.69 0.799146
Target:  5'- aGCCUCUGCcGCGUcagccgCCGAGACUGcauccGCg -3'
miRNA:   3'- -UGGAGACGcCGUA------GGCUCUGAUac---CG- -5'
28826 3' -55.5 NC_006146.1 + 90606 0.69 0.816754
Target:  5'- gACCUCU--GGUggCCGAGGCaGUGGUa -3'
miRNA:   3'- -UGGAGAcgCCGuaGGCUCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 16101 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5'
28826 3' -55.5 NC_006146.1 + 25335 0.74 0.515678
Target:  5'- gUCUCUGCuGGCAgagucugagcgauccUCCGAGACUccgGGCc -3'
miRNA:   3'- uGGAGACG-CCGU---------------AGGCUCUGAua-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.