miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 3' -55.5 NC_006146.1 + 90606 0.69 0.816754
Target:  5'- gACCUCU--GGUggCCGAGGCaGUGGUa -3'
miRNA:   3'- -UGGAGAcgCCGuaGGCUCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 38435 0.68 0.864566
Target:  5'- gGCCUCUGCuGGCAcacauccccugccUCCGGgguGACg--GGUg -3'
miRNA:   3'- -UGGAGACG-CCGU-------------AGGCU---CUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 43475 0.67 0.912434
Target:  5'- aGCCUCcucgGCGGCcgUUGAcaccGGCUccGGCg -3'
miRNA:   3'- -UGGAGa---CGCCGuaGGCU----CUGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 53149 0.7 0.733242
Target:  5'- uCCUCUGUGGCGgcgaCUGcGGCgGUGGCc -3'
miRNA:   3'- uGGAGACGCCGUa---GGCuCUGaUACCG- -5'
28826 3' -55.5 NC_006146.1 + 48197 0.68 0.872715
Target:  5'- cGCCgacuUGGCAUCCGGGgACUGgagGGCc -3'
miRNA:   3'- -UGGagacGCCGUAGGCUC-UGAUa--CCG- -5'
28826 3' -55.5 NC_006146.1 + 62996 0.67 0.879899
Target:  5'- gGCC-CUG-GGC-UCCGGGAgUcUGGCg -3'
miRNA:   3'- -UGGaGACgCCGuAGGCUCUgAuACCG- -5'
28826 3' -55.5 NC_006146.1 + 70146 0.66 0.918242
Target:  5'- cGCCUUcGCcuGGCuccuggCCGGGGCgcugGUGGCc -3'
miRNA:   3'- -UGGAGaCG--CCGua----GGCUCUGa---UACCG- -5'
28826 3' -55.5 NC_006146.1 + 131599 0.69 0.816754
Target:  5'- gACUaCUGUGGUAgUgGGGGCUGUGGUa -3'
miRNA:   3'- -UGGaGACGCCGUaGgCUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 53727 0.67 0.879899
Target:  5'- uCCUCUccgggagccGCGGCugcgCCGGGGCgaagacgGGCg -3'
miRNA:   3'- uGGAGA---------CGCCGua--GGCUCUGaua----CCG- -5'
28826 3' -55.5 NC_006146.1 + 69054 0.68 0.872715
Target:  5'- cACCcguggUGCGGCAgcCCGAGcGCUcgGGCc -3'
miRNA:   3'- -UGGag---ACGCCGUa-GGCUC-UGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 102589 0.66 0.918242
Target:  5'- uCCUCUcGCGGC--CCGAGGag--GGCu -3'
miRNA:   3'- uGGAGA-CGCCGuaGGCUCUgauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 93153 0.72 0.652849
Target:  5'- gGCCUCUGCGGCAcuaUCCGGGuCa----- -3'
miRNA:   3'- -UGGAGACGCCGU---AGGCUCuGauaccg -5'
28826 3' -55.5 NC_006146.1 + 10859 0.72 0.62219
Target:  5'- uCCUCUGCGGCAUCaccgugGAGcCg--GGCu -3'
miRNA:   3'- uGGAGACGCCGUAGg-----CUCuGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 117570 0.67 0.900111
Target:  5'- cGCC-CcGCGGCcgCCGGGccucCUcgGGCu -3'
miRNA:   3'- -UGGaGaCGCCGuaGGCUCu---GAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 77425 1.12 0.002211
Target:  5'- aACCUCUGCGGCAUCCGAGACUAUGGCa -3'
miRNA:   3'- -UGGAGACGCCGUAGGCUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 40253 0.67 0.900111
Target:  5'- gACCUCggGUGGgAUCCguaguaggGAGGCgcgGGCg -3'
miRNA:   3'- -UGGAGa-CGCCgUAGG--------CUCUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 114611 0.68 0.872715
Target:  5'- cACCUCgagGCGGCG-CUG-GACguccUGGCc -3'
miRNA:   3'- -UGGAGa--CGCCGUaGGCuCUGau--ACCG- -5'
28826 3' -55.5 NC_006146.1 + 128080 0.67 0.87919
Target:  5'- gGCCUCaugcaggUGCGGgAggggCCGAGGCaggggacaAUGGCg -3'
miRNA:   3'- -UGGAG-------ACGCCgUa---GGCUCUGa-------UACCG- -5'
28826 3' -55.5 NC_006146.1 + 148208 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 145130 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.