miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 3' -55.5 NC_006146.1 + 108541 0.72 0.663046
Target:  5'- gGCCUCUccggcGCGGCGUUgGAGugGCUGggcuUGGCu -3'
miRNA:   3'- -UGGAGA-----CGCCGUAGgCUC--UGAU----ACCG- -5'
28826 3' -55.5 NC_006146.1 + 142052 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 128080 0.67 0.87919
Target:  5'- gGCCUCaugcaggUGCGGgAggggCCGAGGCaggggacaAUGGCg -3'
miRNA:   3'- -UGGAG-------ACGCCgUa---GGCUCUGa-------UACCG- -5'
28826 3' -55.5 NC_006146.1 + 114611 0.68 0.872715
Target:  5'- cACCUCgagGCGGCG-CUG-GACguccUGGCc -3'
miRNA:   3'- -UGGAGa--CGCCGUaGGCuCUGau--ACCG- -5'
28826 3' -55.5 NC_006146.1 + 120968 0.68 0.865317
Target:  5'- uACacg-GCGGaCGUCCGGGACcgaGUGGCc -3'
miRNA:   3'- -UGgagaCGCC-GUAGGCUCUGa--UACCG- -5'
28826 3' -55.5 NC_006146.1 + 41847 0.68 0.857709
Target:  5'- gGCUgUCUGCgccGGCGUCUGGGcccaGCUcgGGCu -3'
miRNA:   3'- -UGG-AGACG---CCGUAGGCUC----UGAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 38284 0.69 0.82531
Target:  5'- -gCUCUGUGGCAgacaUCUuAGACUA-GGCu -3'
miRNA:   3'- ugGAGACGCCGU----AGGcUCUGAUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 5386 0.7 0.780937
Target:  5'- uACCUCaUGUGGCugcUCCGAGAaUAcGGUg -3'
miRNA:   3'- -UGGAG-ACGCCGu--AGGCUCUgAUaCCG- -5'
28826 3' -55.5 NC_006146.1 + 120522 0.7 0.771628
Target:  5'- aGCCgcguggaUGCGGCGg-CGGGACUGcUGGCc -3'
miRNA:   3'- -UGGag-----ACGCCGUagGCUCUGAU-ACCG- -5'
28826 3' -55.5 NC_006146.1 + 145130 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 148208 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 151286 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 58518 0.66 0.939093
Target:  5'- aGCCcCUGCGGCGUCCacaACUucuaAUGGa -3'
miRNA:   3'- -UGGaGACGCCGUAGGcucUGA----UACCg -5'
28826 3' -55.5 NC_006146.1 + 102589 0.66 0.918242
Target:  5'- uCCUCUcGCGGC--CCGAGGag--GGCu -3'
miRNA:   3'- uGGAGA-CGCCGuaGGCUCUgauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 126442 0.67 0.900111
Target:  5'- cGCUUcCUGCGuGgGauUCCacggGAGGCUAUGGCa -3'
miRNA:   3'- -UGGA-GACGC-CgU--AGG----CUCUGAUACCG- -5'
28826 3' -55.5 NC_006146.1 + 118271 0.67 0.900111
Target:  5'- cGCCagaGCGGCAUCCucagGGGGCacgagAUGGCc -3'
miRNA:   3'- -UGGagaCGCCGUAGG----CUCUGa----UACCG- -5'
28826 3' -55.5 NC_006146.1 + 117570 0.67 0.900111
Target:  5'- cGCC-CcGCGGCcgCCGGGccucCUcgGGCu -3'
miRNA:   3'- -UGGaGaCGCCGuaGGCUCu---GAuaCCG- -5'
28826 3' -55.5 NC_006146.1 + 40253 0.67 0.900111
Target:  5'- gACCUCggGUGGgAUCCguaguaggGAGGCgcgGGCg -3'
miRNA:   3'- -UGGAGa-CGCCgUAGG--------CUCUGauaCCG- -5'
28826 3' -55.5 NC_006146.1 + 157442 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5'
28826 3' -55.5 NC_006146.1 + 154364 0.67 0.8936
Target:  5'- gGCCUCUGgGGCcacCCG-GGCUGccggGGUc -3'
miRNA:   3'- -UGGAGACgCCGua-GGCuCUGAUa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.