Results 1 - 20 of 372 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 75853 | 0.66 | 0.877476 |
Target: 5'- cUGGaCCAcaaacgUGAUCGUGGUggaCGAGGCCgGGa -3' miRNA: 3'- -ACC-GGU------ACUGGUAUCG---GUUCCGGgUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 108432 | 0.66 | 0.877476 |
Target: 5'- cGGCCAggugGAcgcagugcccguCCGUA-CCAAGGUCCAc -3' miRNA: 3'- aCCGGUa---CU------------GGUAUcGGUUCCGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 135699 | 0.66 | 0.877476 |
Target: 5'- gUGGCCG-GGCCGcuGCCG-GGUCCGc -3' miRNA: 3'- -ACCGGUaCUGGUauCGGUuCCGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 108946 | 0.66 | 0.877476 |
Target: 5'- gGGCUgaaaAUGugcaccgucCCGUGGaCCAGGGCCCuGg -3' miRNA: 3'- aCCGG----UACu--------GGUAUC-GGUUCCGGGuC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 110103 | 0.66 | 0.877476 |
Target: 5'- cGGUCcgGACCA-GGCCcuggaccuGGUCCGGc -3' miRNA: 3'- aCCGGuaCUGGUaUCGGuu------CCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 35964 | 0.66 | 0.877476 |
Target: 5'- gGGCUgaccuGCCGUuGCgCAGGGCCCAa -3' miRNA: 3'- aCCGGuac--UGGUAuCG-GUUCCGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 74255 | 0.66 | 0.877476 |
Target: 5'- cGGCCGucuccccgggcUGGCCAaagAGCCGGuugcGGUCCAc -3' miRNA: 3'- aCCGGU-----------ACUGGUa--UCGGUU----CCGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 141316 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 144394 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 147472 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 150550 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 166691 | 0.66 | 0.877476 |
Target: 5'- aGGCCGUGACCAccaccgucaUGaagccgguucccGCCGAG-CCCGu -3' miRNA: 3'- aCCGGUACUGGU---------AU------------CGGUUCcGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 156705 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 153628 | 0.66 | 0.877476 |
Target: 5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3' miRNA: 3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 158245 | 0.66 | 0.873142 |
Target: 5'- cUGGUaGUGGCCcuugAGCCAcucggggggacucuGGCCCAGc -3' miRNA: 3'- -ACCGgUACUGGua--UCGGUu-------------CCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 100588 | 0.66 | 0.870209 |
Target: 5'- aGGCCAcaaugacuaaGACCAgcGUCAgaAGcGCCCAGa -3' miRNA: 3'- aCCGGUa---------CUGGUauCGGU--UC-CGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 53666 | 0.66 | 0.870209 |
Target: 5'- cUGGCCccGGCCGcuuuCCAGGaaGCCCGGg -3' miRNA: 3'- -ACCGGuaCUGGUauc-GGUUC--CGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 61936 | 0.66 | 0.870209 |
Target: 5'- aGGCCuucacgGGCCcgGUGaUCAAGGCUCAGg -3' miRNA: 3'- aCCGGua----CUGG--UAUcGGUUCCGGGUC- -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 123611 | 0.66 | 0.870209 |
Target: 5'- uUGGCCA--GCC--AGCgGAGGUCCAc -3' miRNA: 3'- -ACCGGUacUGGuaUCGgUUCCGGGUc -5' |
|||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 13340 | 0.66 | 0.870209 |
Target: 5'- cGGCCGcGGCCuacGCgGAGGCCa-- -3' miRNA: 3'- aCCGGUaCUGGuauCGgUUCCGGguc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home