miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 110103 0.66 0.877476
Target:  5'- cGGUCcgGACCA-GGCCcuggaccuGGUCCGGc -3'
miRNA:   3'- aCCGGuaCUGGUaUCGGuu------CCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 53666 0.66 0.870209
Target:  5'- cUGGCCccGGCCGcuuuCCAGGaaGCCCGGg -3'
miRNA:   3'- -ACCGGuaCUGGUauc-GGUUC--CGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 100588 0.66 0.870209
Target:  5'- aGGCCAcaaugacuaaGACCAgcGUCAgaAGcGCCCAGa -3'
miRNA:   3'- aCCGGUa---------CUGGUauCGGU--UC-CGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 18500 0.66 0.86947
Target:  5'- -uGCCAUgGGCCAgGGCCAGGGgcaaaacauuacuCCCAu -3'
miRNA:   3'- acCGGUA-CUGGUaUCGGUUCC-------------GGGUc -5'
28826 5' -57.1 NC_006146.1 + 125099 0.66 0.862727
Target:  5'- cGGCCGUGGCgGcGGCCuuccucGGCCg-- -3'
miRNA:   3'- aCCGGUACUGgUaUCGGuu----CCGGguc -5'
28826 5' -57.1 NC_006146.1 + 62722 0.66 0.862727
Target:  5'- cGGCCGUGuacauGCCcaggAUAGCCGGaGCCCc- -3'
miRNA:   3'- aCCGGUAC-----UGG----UAUCGGUUcCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 18986 0.66 0.862727
Target:  5'- cGGCag-GGCCGgAGCCAgaccccaguggGGGCCCc- -3'
miRNA:   3'- aCCGguaCUGGUaUCGGU-----------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 13233 0.66 0.862727
Target:  5'- cGGCCA-GACCcaGUucuacaucAGCCu-GGUCCAGg -3'
miRNA:   3'- aCCGGUaCUGG--UA--------UCGGuuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 24227 0.66 0.862727
Target:  5'- gGGCCggGGCCGc--CCAccGCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGUaucGGUucCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 13340 0.66 0.870209
Target:  5'- cGGCCGcGGCCuacGCgGAGGCCa-- -3'
miRNA:   3'- aCCGGUaCUGGuauCGgUUCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 76116 0.66 0.870209
Target:  5'- cGGCCuacGUGGaCGUGGCCcgcaacuGGGCCCu- -3'
miRNA:   3'- aCCGG---UACUgGUAUCGGu------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 35964 0.66 0.877476
Target:  5'- gGGCUgaccuGCCGUuGCgCAGGGCCCAa -3'
miRNA:   3'- aCCGGuac--UGGUAuCG-GUUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 166691 0.66 0.877476
Target:  5'- aGGCCGUGACCAccaccgucaUGaagccgguucccGCCGAG-CCCGu -3'
miRNA:   3'- aCCGGUACUGGU---------AU------------CGGUUCcGGGUc -5'
28826 5' -57.1 NC_006146.1 + 156705 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 153628 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 150550 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 147472 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 144394 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 141316 0.66 0.877476
Target:  5'- cUGGCCu--GCCAgggGGCaaagGGGGCUCAGa -3'
miRNA:   3'- -ACCGGuacUGGUa--UCGg---UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 74255 0.66 0.877476
Target:  5'- cGGCCGucuccccgggcUGGCCAaagAGCCGGuugcGGUCCAc -3'
miRNA:   3'- aCCGGU-----------ACUGGUa--UCGGUU----CCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.