Results 1 - 20 of 372 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28826 | 5' | -57.1 | NC_006146.1 | + | 77464 | 1.09 | 0.002052 |
Target: 5'- cUGGCCAUGACCAUAGCCAAGGCCCAGg -3' miRNA: 3'- -ACCGGUACUGGUAUCGGUUCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 54044 | 0.82 | 0.149758 |
Target: 5'- cGGCCAUGucgGCgGUGGUCAGGGCCCAc -3' miRNA: 3'- aCCGGUAC---UGgUAUCGGUUCCGGGUc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 125360 | 0.79 | 0.207808 |
Target: 5'- aGGCCAgggcGGCCA-AGCCcaagGAGGCCCAGg -3' miRNA: 3'- aCCGGUa---CUGGUaUCGG----UUCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 117881 | 0.77 | 0.284302 |
Target: 5'- cGGCCGcGGCC--AGCCGcgugAGGCCCAGg -3' miRNA: 3'- aCCGGUaCUGGuaUCGGU----UCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 82504 | 0.77 | 0.291026 |
Target: 5'- -aGCCAUaGGCCGUGGUCAGGGCCUg- -3' miRNA: 3'- acCGGUA-CUGGUAUCGGUUCCGGGuc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 23470 | 0.77 | 0.297184 |
Target: 5'- aGGCCcUGGCCGUGGCCAgguacgggcugguGGGCUCGc -3' miRNA: 3'- aCCGGuACUGGUAUCGGU-------------UCCGGGUc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 147439 | 0.77 | 0.304847 |
Target: 5'- cUGGCCAcGGCCAgGGCCucguAGGCCgAGa -3' miRNA: 3'- -ACCGGUaCUGGUaUCGGu---UCCGGgUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 41849 | 0.77 | 0.304847 |
Target: 5'- gGGCCGUGGCCAggGGCUAccgGGGCCUc- -3' miRNA: 3'- aCCGGUACUGGUa-UCGGU---UCCGGGuc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 164446 | 0.75 | 0.354777 |
Target: 5'- gGGCCGUGGuuguuguuggggccCCAUGGaccCCAGGGCCCAc -3' miRNA: 3'- aCCGGUACU--------------GGUAUC---GGUUCCGGGUc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 120549 | 0.75 | 0.357143 |
Target: 5'- cUGGCCAaGAuccCCAggcUGGCCGAGGCCgCGGa -3' miRNA: 3'- -ACCGGUaCU---GGU---AUCGGUUCCGG-GUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 67207 | 0.75 | 0.357143 |
Target: 5'- cUGGCCGUGGCCGgucgccUGGCCGgccAGGCaCAGg -3' miRNA: 3'- -ACCGGUACUGGU------AUCGGU---UCCGgGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 47401 | 0.75 | 0.365109 |
Target: 5'- gGGUC--GACCGUGGCCAGGGCCa-- -3' miRNA: 3'- aCCGGuaCUGGUAUCGGUUCCGGguc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 24277 | 0.75 | 0.365109 |
Target: 5'- aGGCCucGUGACCcUGGCCGGGGgCUGGa -3' miRNA: 3'- aCCGG--UACUGGuAUCGGUUCCgGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 113684 | 0.75 | 0.373197 |
Target: 5'- gGGCCcgGGCCc-GGCCuccGGCCCGGg -3' miRNA: 3'- aCCGGuaCUGGuaUCGGuu-CCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 147980 | 0.75 | 0.381406 |
Target: 5'- aUGGUCGUGugCAUGGCCcucguGGGGCCUu- -3' miRNA: 3'- -ACCGGUACugGUAUCGG-----UUCCGGGuc -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 41576 | 0.74 | 0.398181 |
Target: 5'- cGGCCGccuacuggcUGGCCGaGGCggaGAGGCCCGGg -3' miRNA: 3'- aCCGGU---------ACUGGUaUCGg--UUCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 26114 | 0.74 | 0.432217 |
Target: 5'- aGGCCAcaauUGGuCCAUGGaaaggcaCCGGGGCCCGGu -3' miRNA: 3'- aCCGGU----ACU-GGUAUC-------GGUUCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 47634 | 0.74 | 0.433112 |
Target: 5'- gGGCCAcgagccgucucUGGCCGcGGCCc-GGCCCAGc -3' miRNA: 3'- aCCGGU-----------ACUGGUaUCGGuuCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 102421 | 0.74 | 0.44212 |
Target: 5'- cGGCCAaagaGCCAUAGCCcgcagcAGGUCCAGu -3' miRNA: 3'- aCCGGUac--UGGUAUCGGu-----UCCGGGUC- -5' |
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28826 | 5' | -57.1 | NC_006146.1 | + | 7090 | 0.74 | 0.44212 |
Target: 5'- aGGCaugcuaaaauUGGCCc--GCCAAGGCCCAGg -3' miRNA: 3'- aCCGgu--------ACUGGuauCGGUUCCGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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