miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 102421 0.74 0.44212
Target:  5'- cGGCCAaagaGCCAUAGCCcgcagcAGGUCCAGu -3'
miRNA:   3'- aCCGGUac--UGGUAUCGGu-----UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 42633 0.73 0.451233
Target:  5'- cGGCCGccGCCGUgGGCCucacguaguGGGCCCAGa -3'
miRNA:   3'- aCCGGUacUGGUA-UCGGu--------UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 138866 0.73 0.459522
Target:  5'- gGGUCAUGACCugGGCCAgcgccucgucccgAGGCCCc- -3'
miRNA:   3'- aCCGGUACUGGuaUCGGU-------------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 160681 0.73 0.460448
Target:  5'- cGGCaCAUGACCAgGGCCGguagaggcAGGUCCGu -3'
miRNA:   3'- aCCG-GUACUGGUaUCGGU--------UCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 3983 0.73 0.460448
Target:  5'- gGGCaccaaGUGGCCAUGGUCGAGGCgCuGa -3'
miRNA:   3'- aCCGg----UACUGGUAUCGGUUCCGgGuC- -5'
28826 5' -57.1 NC_006146.1 + 90874 0.73 0.469762
Target:  5'- uUGGCUAUGcACCcgAGCCu-GGCCCu- -3'
miRNA:   3'- -ACCGGUAC-UGGuaUCGGuuCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 44705 0.73 0.469762
Target:  5'- cGGCgGUGGCCGUGGCCcccgcuGGCCg-- -3'
miRNA:   3'- aCCGgUACUGGUAUCGGuu----CCGGguc -5'
28826 5' -57.1 NC_006146.1 + 106198 0.73 0.469762
Target:  5'- gGGuCCcgGGCCuccuGCCAGGGCCUGGu -3'
miRNA:   3'- aCC-GGuaCUGGuau-CGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 90073 0.73 0.469762
Target:  5'- gGGCCAUGGCCGUGuucuCCAAGGCaggCCGu -3'
miRNA:   3'- aCCGGUACUGGUAUc---GGUUCCG---GGUc -5'
28826 5' -57.1 NC_006146.1 + 60426 0.73 0.475396
Target:  5'- cUGGCCGggguggaaugucaGACCAUGGCCGagugagcggcAGGCCgCGGg -3'
miRNA:   3'- -ACCGGUa------------CUGGUAUCGGU----------UCCGG-GUC- -5'
28826 5' -57.1 NC_006146.1 + 34059 0.73 0.479171
Target:  5'- cGGCCGgggGucCCGUGGCaCGGGGCCgGGg -3'
miRNA:   3'- aCCGGUa--Cu-GGUAUCG-GUUCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 6408 0.73 0.488671
Target:  5'- gGGCCAUGGggucccuuuggcCCAgGGCCAuguGGGCCCuGg -3'
miRNA:   3'- aCCGGUACU------------GGUaUCGGU---UCCGGGuC- -5'
28826 5' -57.1 NC_006146.1 + 55461 0.73 0.488671
Target:  5'- gUGGCCAcccgcucgaUGGCCGcgGGCgagaaCGAGGCCCGGc -3'
miRNA:   3'- -ACCGGU---------ACUGGUa-UCG-----GUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 52414 0.73 0.49826
Target:  5'- gGGCCGUcaaGACCGUGGCCucuGCCCu- -3'
miRNA:   3'- aCCGGUA---CUGGUAUCGGuucCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 94791 0.72 0.507931
Target:  5'- gGGCCAcGuCCAcguaGGCC-AGGCCCGGg -3'
miRNA:   3'- aCCGGUaCuGGUa---UCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 124762 0.72 0.507931
Target:  5'- cUGGuCCAcaaucaGAgCAcGGCCAGGGCCCGGg -3'
miRNA:   3'- -ACC-GGUa-----CUgGUaUCGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 148179 0.72 0.508902
Target:  5'- cGGCCAUGcCCAcgugcguccagacggAGCaCAucAGGCCCAGg -3'
miRNA:   3'- aCCGGUACuGGUa--------------UCG-GU--UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 45510 0.72 0.517681
Target:  5'- uUGGCCAagacGGCCAcGGUgGGGGCCUGGg -3'
miRNA:   3'- -ACCGGUa---CUGGUaUCGgUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 105175 0.72 0.517681
Target:  5'- aGGCCgcaccguccaGUGACCGgGGCCGGGGagCCGGg -3'
miRNA:   3'- aCCGG----------UACUGGUaUCGGUUCCg-GGUC- -5'
28826 5' -57.1 NC_006146.1 + 57220 0.72 0.517681
Target:  5'- gGGCCGgaGGCCG-GGCCcGGGCCCGa -3'
miRNA:   3'- aCCGGUa-CUGGUaUCGGuUCCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.