miRNA display CGI


Results 21 - 40 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 76116 0.66 0.870209
Target:  5'- cGGCCuacGUGGaCGUGGCCcgcaacuGGGCCCu- -3'
miRNA:   3'- aCCGG---UACUgGUAUCGGu------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 13340 0.66 0.870209
Target:  5'- cGGCCGcGGCCuacGCgGAGGCCa-- -3'
miRNA:   3'- aCCGGUaCUGGuauCGgUUCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 53666 0.66 0.870209
Target:  5'- cUGGCCccGGCCGcuuuCCAGGaaGCCCGGg -3'
miRNA:   3'- -ACCGGuaCUGGUauc-GGUUC--CGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 47244 0.66 0.870209
Target:  5'- cUGGCgCggGucgaCGUGGCCccuGGCCCGGg -3'
miRNA:   3'- -ACCG-GuaCug--GUAUCGGuu-CCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 18500 0.66 0.86947
Target:  5'- -uGCCAUgGGCCAgGGCCAGGGgcaaaacauuacuCCCAu -3'
miRNA:   3'- acCGGUA-CUGGUaUCGGUUCC-------------GGGUc -5'
28826 5' -57.1 NC_006146.1 + 115219 0.66 0.86947
Target:  5'- uUGuaCAUGAugucacCCAgggAGCCcagcugaGAGGCCCAGg -3'
miRNA:   3'- -ACcgGUACU------GGUa--UCGG-------UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 159879 0.66 0.868729
Target:  5'- cUGGUCuccucgcagagGGCCucgaGGCCGGGGCCCu- -3'
miRNA:   3'- -ACCGGua---------CUGGua--UCGGUUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 137887 0.66 0.862727
Target:  5'- gGGCCGgcagGGgguccCCGUGGaCAGGGCCgGGg -3'
miRNA:   3'- aCCGGUa---CU-----GGUAUCgGUUCCGGgUC- -5'
28826 5' -57.1 NC_006146.1 + 44318 0.66 0.862727
Target:  5'- gGGCUggGGCCGUggcAGCCGGGGgCUu- -3'
miRNA:   3'- aCCGGuaCUGGUA---UCGGUUCCgGGuc -5'
28826 5' -57.1 NC_006146.1 + 18986 0.66 0.862727
Target:  5'- cGGCag-GGCCGgAGCCAgaccccaguggGGGCCCc- -3'
miRNA:   3'- aCCGguaCUGGUaUCGGU-----------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 69853 0.66 0.862727
Target:  5'- gUGGCCcUGGgaGgucgGGCguaGAGGCCCAGg -3'
miRNA:   3'- -ACCGGuACUggUa---UCGg--UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 62722 0.66 0.862727
Target:  5'- cGGCCGUGuacauGCCcaggAUAGCCGGaGCCCc- -3'
miRNA:   3'- aCCGGUAC-----UGG----UAUCGGUUcCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 125099 0.66 0.862727
Target:  5'- cGGCCGUGGCgGcGGCCuuccucGGCCg-- -3'
miRNA:   3'- aCCGGUACUGgUaUCGGuu----CCGGguc -5'
28826 5' -57.1 NC_006146.1 + 24227 0.66 0.862727
Target:  5'- gGGCCggGGCCGc--CCAccGCCCGGg -3'
miRNA:   3'- aCCGGuaCUGGUaucGGUucCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 13233 0.66 0.862727
Target:  5'- cGGCCA-GACCcaGUucuacaucAGCCu-GGUCCAGg -3'
miRNA:   3'- aCCGGUaCUGG--UA--------UCGGuuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 137972 0.66 0.855038
Target:  5'- cGGCCG-GGCCucc-CgGGGGCCCGGc -3'
miRNA:   3'- aCCGGUaCUGGuaucGgUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 129039 0.66 0.855038
Target:  5'- cGGCgCA--GCCcgAGCU-GGGCCCAGa -3'
miRNA:   3'- aCCG-GUacUGGuaUCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 37256 0.66 0.855038
Target:  5'- cGGCCAUGcACCAca-UCAAaGCCCAGc -3'
miRNA:   3'- aCCGGUAC-UGGUaucGGUUcCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 81197 0.66 0.855038
Target:  5'- aGGCCcgGAcCCGUguaucccaGGCCGuuccccGGGCCCc- -3'
miRNA:   3'- aCCGGuaCU-GGUA--------UCGGU------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 38178 0.66 0.855038
Target:  5'- gGGCUAcugggGACCAccgGGCaucgugaAGGGCCCAa -3'
miRNA:   3'- aCCGGUa----CUGGUa--UCGg------UUCCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.