miRNA display CGI


Results 41 - 60 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 68925 0.66 0.855038
Target:  5'- gGaGCCAgaGCCucUAGCCAGaGCCCGGa -3'
miRNA:   3'- aC-CGGUacUGGu-AUCGGUUcCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 129039 0.66 0.855038
Target:  5'- cGGCgCA--GCCcgAGCU-GGGCCCAGa -3'
miRNA:   3'- aCCG-GUacUGGuaUCGGuUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 44252 0.66 0.847147
Target:  5'- cGGCgGUGuCCAUuGCCccugcGGGcCCCGGg -3'
miRNA:   3'- aCCGgUACuGGUAuCGGu----UCC-GGGUC- -5'
28826 5' -57.1 NC_006146.1 + 68487 0.66 0.847147
Target:  5'- gGGCUAUGGCUcuuUGGCCGc--CCCAGg -3'
miRNA:   3'- aCCGGUACUGGu--AUCGGUuccGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 62328 0.66 0.847147
Target:  5'- aGGCCAgagacgccGCCGccAGCCAAG-CCCAGc -3'
miRNA:   3'- aCCGGUac------UGGUa-UCGGUUCcGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 115223 0.66 0.847147
Target:  5'- cGGCCGUGcCCGUGcuggccuucaacGCCGccuGGCuCCGGc -3'
miRNA:   3'- aCCGGUACuGGUAU------------CGGUu--CCG-GGUC- -5'
28826 5' -57.1 NC_006146.1 + 61498 0.66 0.847147
Target:  5'- gGGCCcUGACCGacGGCCGuccgaucagggAGGCCUc- -3'
miRNA:   3'- aCCGGuACUGGUa-UCGGU-----------UCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 138946 0.66 0.847147
Target:  5'- uUGGCCuaaccUGGCCcUGGCUuuGGCCUu- -3'
miRNA:   3'- -ACCGGu----ACUGGuAUCGGuuCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 158544 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 155465 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 152387 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 149309 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 143153 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 146231 0.66 0.847147
Target:  5'- aGGaCGggGACgCGgagGGCCuGAGGCCCAGg -3'
miRNA:   3'- aCCgGUa-CUG-GUa--UCGG-UUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 13847 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 45120 0.66 0.83906
Target:  5'- cGGCCgGUGACCGccgggAGCCuuGGGCUuugCGGg -3'
miRNA:   3'- aCCGG-UACUGGUa----UCGGu-UCCGG---GUC- -5'
28826 5' -57.1 NC_006146.1 + 23080 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 29236 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 130599 0.66 0.83906
Target:  5'- cGGCCuacuuUGGCCugcccGGCCucuuuGGCCCGc -3'
miRNA:   3'- aCCGGu----ACUGGua---UCGGuu---CCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 65322 0.66 0.83906
Target:  5'- cGGCCucucGAgUAUGGUgAGGGUCCGGc -3'
miRNA:   3'- aCCGGua--CUgGUAUCGgUUCCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.