miRNA display CGI


Results 1 - 20 of 372 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28826 5' -57.1 NC_006146.1 + 1487 0.71 0.59787
Target:  5'- gUGGCCuccUGACCAUGGCagccGGCCUc- -3'
miRNA:   3'- -ACCGGu--ACUGGUAUCGguu-CCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 3983 0.73 0.460448
Target:  5'- gGGCaccaaGUGGCCAUGGUCGAGGCgCuGa -3'
miRNA:   3'- aCCGg----UACUGGUAUCGGUUCCGgGuC- -5'
28826 5' -57.1 NC_006146.1 + 4612 0.67 0.82233
Target:  5'- gGGaaaCAUGACCGaGGUgAugcagacccugcGGGCCCAGa -3'
miRNA:   3'- aCCg--GUACUGGUaUCGgU------------UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 5634 0.69 0.729661
Target:  5'- gGGaCAUGGCCAUGGCgGGGGa-CAGg -3'
miRNA:   3'- aCCgGUACUGGUAUCGgUUCCggGUC- -5'
28826 5' -57.1 NC_006146.1 + 6408 0.73 0.488671
Target:  5'- gGGCCAUGGggucccuuuggcCCAgGGCCAuguGGGCCCuGg -3'
miRNA:   3'- aCCGGUACU------------GGUaUCGGU---UCCGGGuC- -5'
28826 5' -57.1 NC_006146.1 + 6668 0.66 0.83906
Target:  5'- aGGCCccacUGAUgGUGGUaaCAAuGGCCCGGa -3'
miRNA:   3'- aCCGGu---ACUGgUAUCG--GUU-CCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 7090 0.74 0.44212
Target:  5'- aGGCaugcuaaaauUGGCCc--GCCAAGGCCCAGg -3'
miRNA:   3'- aCCGgu--------ACUGGuauCGGUUCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 10826 0.66 0.855038
Target:  5'- gGGCCAUGAgauaggcuCCGaAGCCAgccagcAGGCCa-- -3'
miRNA:   3'- aCCGGUACU--------GGUaUCGGU------UCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 11434 0.68 0.768254
Target:  5'- aGGCCAaggUGGCCAaGGUgGcGGCCCu- -3'
miRNA:   3'- aCCGGU---ACUGGUaUCGgUuCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 11670 0.67 0.804907
Target:  5'- gGGUCcucGCCAUgcGGCCAaguAGGCCCAa -3'
miRNA:   3'- aCCGGuacUGGUA--UCGGU---UCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 12439 0.67 0.830785
Target:  5'- cUGGacaCAUGAgCCAggcGCCGGGGCCUu- -3'
miRNA:   3'- -ACCg--GUACU-GGUau-CGGUUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 12628 0.67 0.830785
Target:  5'- aGGCCA-GGCCAccuuagacccGGCC-AGGCCCc- -3'
miRNA:   3'- aCCGGUaCUGGUa---------UCGGuUCCGGGuc -5'
28826 5' -57.1 NC_006146.1 + 12720 0.7 0.636726
Target:  5'- cGGCCAUuggGGCCAgcaagcgagaccAGCCcaGAGGCCCGa -3'
miRNA:   3'- aCCGGUA---CUGGUa-----------UCGG--UUCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 13233 0.66 0.862727
Target:  5'- cGGCCA-GACCcaGUucuacaucAGCCu-GGUCCAGg -3'
miRNA:   3'- aCCGGUaCUGG--UA--------UCGGuuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 13340 0.66 0.870209
Target:  5'- cGGCCGcGGCCuacGCgGAGGCCa-- -3'
miRNA:   3'- aCCGGUaCUGGuauCGgUUCCGGguc -5'
28826 5' -57.1 NC_006146.1 + 13397 0.67 0.804907
Target:  5'- cGGCCAcgGACUGccucAGCCAggucugcaAGGCCCGc -3'
miRNA:   3'- aCCGGUa-CUGGUa---UCGGU--------UCCGGGUc -5'
28826 5' -57.1 NC_006146.1 + 13847 0.66 0.83906
Target:  5'- cGGCCGgaggGACCccGGC---GGCCCGGu -3'
miRNA:   3'- aCCGGUa---CUGGuaUCGguuCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 13904 0.69 0.689718
Target:  5'- aGGCCgcgcGUGACUuuuuggaaggaGUGGCgGguGGGCCCGGg -3'
miRNA:   3'- aCCGG----UACUGG-----------UAUCGgU--UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 14811 0.7 0.618301
Target:  5'- aGGCCGgccgGGCCGgaggagGGCaCGgucucGGGCCCGGg -3'
miRNA:   3'- aCCGGUa---CUGGUa-----UCG-GU-----UCCGGGUC- -5'
28826 5' -57.1 NC_006146.1 + 15025 0.69 0.699798
Target:  5'- -uGCCAgggaggGGCgCcUGGCCAGGGCCCGc -3'
miRNA:   3'- acCGGUa-----CUG-GuAUCGGUUCCGGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.